Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZKSCAN3Q9BRR0 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZKSCAN3Q9BRR0 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.36□□□□□ -1.71
ZKSCAN3Q9BRR0 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZKSCAN3Q9BRR0 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 RNU5B-2P-201ENST00000363036 113 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 RNU6-1020P-201ENST00000363684 107 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 Y_RNA.292-201ENST00000364904 97 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 SNORA62.3-201ENST00000365110 153 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 RNU1-73P-201ENST00000383971 164 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 RNU6-514P-201ENST00000384208 107 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 Y_RNA.506-201ENST00000384494 102 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 SNORD116-20-201ENST00000384529 92 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 MIR493-201ENST00000385254 89 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 RPL21P17-201ENST00000397467 475 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 RN7SKP27-201ENST00000410684 333 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 MTCO1P5-201ENST00000433573 344 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 NDUFB4P6-201ENST00000436819 366 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 RPL26P26-201ENST00000480251 434 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 AC078918.1-201ENST00000498515 228 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 RNU1-95P-201ENST00000516357 160 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 Y_RNA.683-201ENST00000516508 93 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 RNU1-128P-201ENST00000516704 160 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 AC020895.1-201ENST00000595362 272 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 AC072026.1-201ENST00000605023 201 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 AL133412.1-201ENST00000380194 2992 ntBASIC4.35□□□□□ -1.71
ZKSCAN3Q9BRR0 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 MIR10B-201ENST00000385011 110 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 AL133547.1-201ENST00000448546 220 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 AC117440.1-201ENST00000474107 571 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 AC097462.2-201ENST00000504623 481 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 AC104619.4-201ENST00000510773 249 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 Vault.1-201ENST00000516474 102 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 RNU6-861P-201ENST00000516745 106 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 MIR5695-201ENST00000579717 85 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 MIR6134-201ENST00000617606 109 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 AC132825.6-201ENST00000638861 357 ntBASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
ZKSCAN3Q9BRR0 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.34□□□□□ -1.72
ZKSCAN3Q9BRR0 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.34□□□□□ -1.72
ZKSCAN3Q9BRR0 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
ZKSCAN3Q9BRR0 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 RNA5SP502-201ENST00000362694 119 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 Y_RNA.122-201ENST00000363331 96 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 Y_RNA.275-201ENST00000364726 110 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 AL359837.1-201ENST00000381357 287 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 SNORA5A-201ENST00000384111 134 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 U8.10-201ENST00000384260 133 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 PTMAP2-201ENST00000397627 327 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 Y_RNA.590-201ENST00000410140 107 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 RNU6-1140P-201ENST00000410517 106 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 RNU2-61P-201ENST00000411069 191 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 RPL7P47-201ENST00000497299 556 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 Y_RNA.679-201ENST00000516416 91 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 RNU6-1198P-201ENST00000516904 67 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 AC019159.1-201ENST00000605094 187 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 AL138963.2-201ENST00000605137 226 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 MIR4727-201ENST00000622232 55 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 SNORA43.4-201ENST00000629559 138 ntBASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
ZKSCAN3Q9BRR0 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 SNORD56.1-201ENST00000362913 68 ntBASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 RNU6-281P-201ENST00000384212 103 ntBASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 MIR607-201ENST00000385241 96 ntBASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 RNU6-159P-201ENST00000391080 106 ntBASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 RNU6-493P-201ENST00000391321 108 ntBASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 MIR548I2-201ENST00000408348 149 ntBASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 S100A11P1-201ENST00000477525 312 ntBASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 AC109925.1-201ENST00000478069 331 ntBASIC4.32□□□□□ -1.72
ZKSCAN3Q9BRR0 AC078817.1-201ENST00000492623 435 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 145.9 ms