Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU5F-8P-201ENST00000515941 111 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 RNU6-864P-201ENST00000516256 108 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.32□□□□□ -2.04
NKX3-1Q99801 AP000889.1-201ENST00000530968 660 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.32□□□□□ -2.04
NKX3-1Q99801 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.32□□□□□ -2.04
NKX3-1Q99801 AC011712.1-201ENST00000588959 234 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 AC093913.1-201ENST00000614178 329 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 MIR6852-201ENST00000621699 66 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.32□□□□□ -2.04
NKX3-1Q99801 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
NKX3-1Q99801 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.32□□□□□ -2.04
NKX3-1Q99801 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 VTRNA1-1-201ENST00000363120 99 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 RNU6-105P-201ENST00000363909 104 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 Y_RNA.212-201ENST00000364177 102 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 SNORA68.1-201ENST00000364537 132 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
NKX3-1Q99801 RNU6-748P-201ENST00000384648 107 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 RNU6-293P-201ENST00000411259 106 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 RPL7P12-201ENST00000446719 750 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 AMD1P1-201ENST00000457220 922 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 RPL23AP49-201ENST00000492925 468 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 HMGN1P12-201ENST00000499125 195 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 AC079140.5-201ENST00000507882 310 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 AK3P2-201ENST00000507976 429 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 RNU5B-3P-201ENST00000516601 115 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 SNORA31.15-201ENST00000516771 132 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 GTF3AP2-201ENST00000557014 266 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 MIR4742-201ENST00000581069 85 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 MIR3670-2-201ENST00000582974 65 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 MIR3670-1-201ENST00000584160 65 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 MIR3670-3-201ENST00000584855 65 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 AL356575.1-201ENST00000603008 283 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 MIR3670-4-201ENST00000612260 65 ntBASIC2.31□□□□□ -2.04
NKX3-1Q99801 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
NKX3-1Q99801 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
NKX3-1Q99801 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.31□□□□□ -2.04
NKX3-1Q99801 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
NKX3-1Q99801 AC135776.4-201ENST00000624300 1904 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.3□□□□□ -2.04
NKX3-1Q99801 Y_RNA.72-201ENST00000362894 103 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 RNU6-529P-201ENST00000363383 104 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 SNORA72.1-201ENST00000363485 129 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 SNORA25.6-201ENST00000364121 118 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 RNU6-767P-201ENST00000384132 107 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 RNU6-692P-201ENST00000384496 107 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
NKX3-1Q99801 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 PDCL2P1-201ENST00000419302 352 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 AL365400.1-201ENST00000431854 640 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 AC243964.1-201ENST00000441814 261 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 AC007969.2-201ENST00000441891 191 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 MTND1P11-201ENST00000456661 876 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 AC112771.1-201ENST00000463581 102 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 RPL23AP70-201ENST00000483361 460 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 RN7SKP40-201ENST00000517211 242 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 COPS8P3-201ENST00000526024 482 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 AP000889.2-201ENST00000532684 490 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 MIR548S-201ENST00000581352 82 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.3□□□□□ -2.04
NKX3-1Q99801 AL109809.4-201ENST00000603520 2185 ntBASIC2.3□□□□□ -2.04
NKX3-1Q99801 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
NKX3-1Q99801 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.29□□□□□ -2.04
NKX3-1Q99801 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
NKX3-1Q99801 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
NKX3-1Q99801 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
NKX3-1Q99801 RNU6-845P-201ENST00000362578 103 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 SNORD116-11-201ENST00000383882 92 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 RNU6-622P-201ENST00000384272 103 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 RNU6-95P-201ENST00000384697 107 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
NKX3-1Q99801 AL138827.1-201ENST00000402666 306 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AL513475.1-201ENST00000406602 315 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 MTND3P8-201ENST00000412909 339 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.29□□□□□ -2.04
NKX3-1Q99801 AL591043.1-201ENST00000432461 424 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.29□□□□□ -2.04
NKX3-1Q99801 FABP5P14-201ENST00000437273 393 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 RPS15AP7-201ENST00000439294 405 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms