Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CDX2Q99626 RNU4-24P-201ENST00000364565 139 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 SNORA75-201ENST00000384158 137 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MIR218-1-201ENST00000384999 110 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MIR301A-201ENST00000385261 86 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MIR676-201ENST00000390702 67 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AL353621.1-201ENST00000418219 243 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MTND4P20-201ENST00000424125 869 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 AL022238.1-201ENST00000442557 355 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 AL078601.1-201ENST00000444542 271 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 MTCO2P29-201ENST00000465212 189 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 RPL30P6-201ENST00000475925 342 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AC010424.1-201ENST00000506336 297 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AC116655.1-201ENST00000508324 901 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 RNA5SP112-201ENST00000515937 99 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 RNU2-10P-201ENST00000516375 211 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 RNU6-677P-201ENST00000516914 101 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 RNA5SP364-201ENST00000516938 78 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.68□□□□□ -2.14
CDX2Q99626 MTCYBP33-201ENST00000575007 1130 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MIR4782-201ENST00000577987 79 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MIR1273C-201ENST00000578669 77 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MTND1P15-201ENST00000579262 949 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MIR151B-201ENST00000584249 96 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AL096840.1-201ENST00000603287 93 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AC004492.1-201ENST00000607036 742 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MIR15A-201ENST00000607334 83 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AL627230.6-201ENST00000611129 280 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AL158063.1-201ENST00000615349 536 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 MIR6788-201ENST00000618842 66 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 AC009509.4-201ENST00000619202 509 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 FRG1KP-201ENST00000623592 341 ntBASIC1.68□□□□□ -2.14
CDX2Q99626 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
CDX2Q99626 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CDX2Q99626 RNU4-13P-201ENST00000364019 141 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 RNU6-898P-201ENST00000365627 104 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 RNU1-148P-201ENST00000384472 162 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 RNU6-297P-201ENST00000384636 107 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 MIR517C-201ENST00000385103 95 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 RN7SKP142-201ENST00000411236 328 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.67□□□□□ -2.14
CDX2Q99626 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.67□□□□□ -2.14
CDX2Q99626 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.67□□□□□ -2.14
CDX2Q99626 RPS24P1-201ENST00000438550 371 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 MTND1P34-201ENST00000438556 671 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.67□□□□□ -2.14
CDX2Q99626 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.67□□□□□ -2.14
CDX2Q99626 MTND4P25-201ENST00000441039 533 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 AC016691.1-201ENST00000441321 413 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.67□□□□□ -2.14
CDX2Q99626 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.67□□□□□ -2.14
CDX2Q99626 FABP5P5-201ENST00000515537 406 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 MIR892C-201ENST00000516410 77 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 SNORA31.24-201ENST00000517232 57 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.67□□□□□ -2.14
CDX2Q99626 AC106038.2-201ENST00000520706 568 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.67□□□□□ -2.14
CDX2Q99626 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.67□□□□□ -2.14
CDX2Q99626 MTND4LP18-201ENST00000526864 291 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 AP003181.2-201ENST00000528941 181 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 AL133241.1-201ENST00000556832 487 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 LINC00933-203ENST00000559812 219 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 AC012213.3-201ENST00000577199 777 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CDX2Q99626 AC012065.4-201ENST00000602445 679 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 AL391646.1-201ENST00000603860 190 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
CDX2Q99626 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.67□□□□□ -2.14
CDX2Q99626 AC090582.1-201ENST00000636321 199 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 U6.99-201ENST00000637524 83 ntBASIC1.67□□□□□ -2.14
CDX2Q99626 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 AC103710.2-202ENST00000641454 2853 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 Y_RNA.33-201ENST00000362591 102 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 Y_RNA.194-201ENST00000363985 102 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 RNU6-190P-201ENST00000384154 102 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 RNU6-348P-201ENST00000384386 107 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 MIR95-201ENST00000385072 81 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 MIR147B-201ENST00000390185 80 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 MIR1323-201ENST00000408090 73 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 RNU6-1025P-201ENST00000410629 104 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.66□□□□□ -2.14
CDX2Q99626 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.66□□□□□ -2.14
CDX2Q99626 ZNF885P-201ENST00000420174 1098 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC1.66□□□□□ -2.14
CDX2Q99626 MTCO2P34-201ENST00000421994 607 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.66□□□□□ -2.14
CDX2Q99626 MTCYBP39-201ENST00000437562 491 ntBASIC1.66□□□□□ -2.14
CDX2Q99626 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms