Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.43□□□□□ -1.86
NUP88Q99567 AL391813.1-201ENST00000603098 260 ntBASIC3.43□□□□□ -1.86
NUP88Q99567 MIR3976-201ENST00000606807 139 ntBASIC3.43□□□□□ -1.86
NUP88Q99567 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.43□□□□□ -1.86
NUP88Q99567 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
NUP88Q99567 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
NUP88Q99567 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.42□□□□□ -1.86
NUP88Q99567 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
NUP88Q99567 Y_RNA.474-201ENST00000384341 102 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 Y_RNA.482-201ENST00000384377 111 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 RNU6-1304P-201ENST00000411374 106 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.42□□□□□ -1.86
NUP88Q99567 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.42□□□□□ -1.86
NUP88Q99567 OSTCP8-201ENST00000445117 448 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 AC010265.1-201ENST00000513509 211 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 ACA59.1-201ENST00000515966 143 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 IMMP1LP2-201ENST00000552954 492 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.42□□□□□ -1.86
NUP88Q99567 FRG2DP-202ENST00000566967 323 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 AC008739.2-201ENST00000597006 317 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.42□□□□□ -1.86
NUP88Q99567 C8orf59P2-201ENST00000603441 271 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 AC018889.1-201ENST00000605372 397 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 AC069234.5-201ENST00000611056 416 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 AL359757.2-201ENST00000624309 274 ntBASIC3.42□□□□□ -1.86
NUP88Q99567 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
NUP88Q99567 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
NUP88Q99567 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
NUP88Q99567 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.41□□□□□ -1.86
NUP88Q99567 Y_RNA.259-201ENST00000364619 101 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 RNU6-593P-201ENST00000364716 112 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 RNU6-843P-201ENST00000384454 104 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
NUP88Q99567 RNU4-14P-201ENST00000410858 122 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.41□□□□□ -1.86
NUP88Q99567 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.41□□□□□ -1.86
NUP88Q99567 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.41□□□□□ -1.86
NUP88Q99567 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.41□□□□□ -1.86
NUP88Q99567 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.41□□□□□ -1.86
NUP88Q99567 AP001324.2-201ENST00000461163 319 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.41□□□□□ -1.86
NUP88Q99567 RNA5SP356-201ENST00000515972 94 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 RNA5SP367-201ENST00000516557 118 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 AP005902.1-201ENST00000521358 186 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.41□□□□□ -1.86
NUP88Q99567 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.41□□□□□ -1.86
NUP88Q99567 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.41□□□□□ -1.86
NUP88Q99567 BNIP3P16-201ENST00000589779 534 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 AC241585.2-209ENST00000638217 143 ntBASIC3.41□□□□□ -1.86
NUP88Q99567 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.41□□□□□ -1.86
NUP88Q99567 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
NUP88Q99567 MTND5P19-201ENST00000424872 1794 ntBASIC3.4□□□□□ -1.86
NUP88Q99567 HAUS6P2-201ENST00000433254 2404 ntBASIC3.4□□□□□ -1.86
NUP88Q99567 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
NUP88Q99567 Y_RNA.473-201ENST00000384333 102 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 Y_RNA.500-201ENST00000384466 111 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 MIR544A-201ENST00000384855 91 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 RPS29P13-201ENST00000402041 169 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.4□□□□□ -1.87
NUP88Q99567 AC244505.4-201ENST00000434905 287 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AC236972.2-201ENST00000434979 310 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.4□□□□□ -1.87
NUP88Q99567 DAP3P1-201ENST00000441522 278 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 SSXP5-201ENST00000443473 287 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AC008571.1-201ENST00000467232 300 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.4□□□□□ -1.87
NUP88Q99567 AC083906.5-201ENST00000503722 328 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.4□□□□□ -1.87
NUP88Q99567 RN7SKP43-201ENST00000516173 320 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 SNORA31.23-201ENST00000517219 133 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.4□□□□□ -1.87
NUP88Q99567 AC079600.2-201ENST00000550076 130 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AC105137.2-201ENST00000569073 466 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AC005046.1-201ENST00000608515 625 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AL133215.3-201ENST00000609801 448 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 MTND4LP32-201ENST00000636111 270 ntBASIC3.4□□□□□ -1.87
NUP88Q99567 AC073544.1-201ENST00000600110 1595 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 GABRG2-229ENST00000641017 3628 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
NUP88Q99567 BTF3L4P2-201ENST00000392798 346 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AL031121.1-201ENST00000406553 254 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 MTCO2P27-201ENST00000420740 428 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP88Q99567 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP88Q99567 TRIAP1P1-201ENST00000427062 225 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AC004383.1-201ENST00000438135 289 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AC009969.1-201ENST00000438726 172 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 Y_RNA.632-201ENST00000459189 102 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 RPL30P12-201ENST00000474666 353 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AC092185.1-201ENST00000491371 97 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 Y_RNA.708-201ENST00000516950 96 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.39□□□□□ -1.87
NUP88Q99567 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.39□□□□□ -1.87
NUP88Q99567 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.39□□□□□ -1.87
NUP88Q99567 MIR4672-201ENST00000583126 81 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AC006023.1-201ENST00000603944 259 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AC096772.1-201ENST00000609146 564 ntBASIC3.39□□□□□ -1.87
NUP88Q99567 AL359314.1-201ENST00000616913 261 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms