Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 RPS20P15-201ENST00000412792 311 ntBASIC3.36□□□□□ -1.87
HPS3Q969F9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.36□□□□□ -1.87
HPS3Q969F9 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.36□□□□□ -1.87
HPS3Q969F9 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.36□□□□□ -1.87
HPS3Q969F9 AC009969.1-201ENST00000438726 172 ntBASIC3.36□□□□□ -1.87
HPS3Q969F9 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.36□□□□□ -1.87
HPS3Q969F9 UBE2V1P7-201ENST00000446395 340 ntBASIC3.36□□□□□ -1.87
HPS3Q969F9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.36□□□□□ -1.87
HPS3Q969F9 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.36□□□□□ -1.87
HPS3Q969F9 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.36□□□□□ -1.87
HPS3Q969F9 SNORD19B-201ENST00000459623 84 ntBASIC3.36□□□□□ -1.87
HPS3Q969F9 AC097462.2-201ENST00000504623 481 ntBASIC3.36□□□□□ -1.87
HPS3Q969F9 AC026782.1-201ENST00000512952 449 ntBASIC3.36□□□□□ -1.87
HPS3Q969F9 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.36□□□□□ -1.87
HPS3Q969F9 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.36□□□□□ -1.87
HPS3Q969F9 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.36□□□□□ -1.87
HPS3Q969F9 AC096772.1-201ENST00000609146 564 ntBASIC3.36□□□□□ -1.87
HPS3Q969F9 MIR8076-201ENST00000611401 83 ntBASIC3.36□□□□□ -1.87
HPS3Q969F9 AL365361.1-201ENST00000566942 3481 ntBASIC3.36□□□□□ -1.87
HPS3Q969F9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HPS3Q969F9 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.35□□□□□ -1.87
HPS3Q969F9 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 RBBP8P1-201ENST00000449447 1844 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.35□□□□□ -1.87
HPS3Q969F9 SNORA75.4-201ENST00000391278 119 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 Z82205.1-201ENST00000428456 297 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 USP9YP30-201ENST00000430729 455 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 AL133396.1-201ENST00000432048 687 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.35□□□□□ -1.87
HPS3Q969F9 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.35□□□□□ -1.87
HPS3Q969F9 UQCRHP3-201ENST00000451503 251 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 Y_RNA.653-201ENST00000459091 95 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.35□□□□□ -1.87
HPS3Q969F9 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.35□□□□□ -1.87
HPS3Q969F9 CKS1BP7-201ENST00000522230 235 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.35□□□□□ -1.87
HPS3Q969F9 APOOP3-201ENST00000536787 586 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.35□□□□□ -1.87
HPS3Q969F9 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HPS3Q969F9 GLYCAM1-201ENST00000546596 285 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.35□□□□□ -1.87
HPS3Q969F9 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.35□□□□□ -1.87
HPS3Q969F9 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.35□□□□□ -1.87
HPS3Q969F9 AP000654.2-201ENST00000605633 586 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 MIR3976-201ENST00000606807 139 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 uc_338.14-201ENST00000613162 166 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
HPS3Q969F9 MTND4LP32-201ENST00000636111 270 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 AC241585.2-209ENST00000638217 143 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.35□□□□□ -1.87
HPS3Q969F9 AC099654.7-201ENST00000635788 2127 ntBASIC3.35□□□□□ -1.87
HPS3Q969F9 KPNA2P1-201ENST00000458289 1591 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 MIR22-201ENST00000362190 85 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 RNU6-1188P-201ENST00000363795 107 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
HPS3Q969F9 RNY4P36-201ENST00000391116 96 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 Y_RNA.594-201ENST00000410373 140 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AP000275.1-201ENST00000411943 390 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.34□□□□□ -1.87
HPS3Q969F9 MTND3P9-201ENST00000429526 346 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC236972.1-201ENST00000433225 199 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC243964.1-201ENST00000441814 261 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC007969.2-201ENST00000441891 191 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 RPS29P12-201ENST00000460178 152 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC117440.1-201ENST00000474107 571 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 HMGN1P13-201ENST00000505795 138 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.34□□□□□ -1.87
HPS3Q969F9 PTP4A1P4-201ENST00000512479 322 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 RNU6-307P-201ENST00000516743 106 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 Y_RNA.718-201ENST00000517110 102 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 SNORA31.26-201ENST00000517250 137 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC105137.2-201ENST00000569073 466 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 MIR4273-201ENST00000582824 84 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AP001836.1-201ENST00000604675 523 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AL356157.2-201ENST00000605122 111 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC009229.3-201ENST00000608056 282 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC084781.2-201ENST00000615568 161 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.34□□□□□ -1.87
HPS3Q969F9 AC098657.3-201ENST00000620434 263 ntBASIC3.34□□□□□ -1.87
HPS3Q969F9 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.34□□□□□ -1.87
HPS3Q969F9 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HPS3Q969F9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HPS3Q969F9 AL353743.1-202ENST00000431724 1695 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HPS3Q969F9 Y_RNA.2-201ENST00000362330 96 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 Y_RNA.315-201ENST00000365117 102 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 RNU6-596P-201ENST00000365395 98 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 U8.8-201ENST00000365399 135 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.33□□□□□ -1.88
HPS3Q969F9 AC138623.1-201ENST00000418060 216 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.33□□□□□ -1.88
HPS3Q969F9 SAR1AP4-201ENST00000429225 591 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 AC009812.2-201ENST00000517657 457 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.33□□□□□ -1.88
HPS3Q969F9 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.33□□□□□ -1.88
HPS3Q969F9 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.33□□□□□ -1.88
HPS3Q969F9 AC078795.3-201ENST00000602913 472 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 AL669831.3-213ENST00000636676 183 ntBASIC3.33□□□□□ -1.88
HPS3Q969F9 MIR622-201ENST00000638396 96 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms