Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.7□□□□□ -1.82
USP53Q70EK8 AF127577.6-201ENST00000623352 2191 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 AC233263.6-201ENST00000631132 1963 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP53Q70EK8 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.69□□□□□ -1.82
USP53Q70EK8 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
USP53Q70EK8 Y_RNA.19-201ENST00000362462 99 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 Y_RNA.26-201ENST00000362539 101 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 RNU5B-2P-201ENST00000363036 113 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 RNU6-198P-201ENST00000384258 104 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 RNU6-622P-201ENST00000384272 103 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
USP53Q70EK8 NDUFB4P4-201ENST00000404822 243 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 RNA5SP390-201ENST00000410191 113 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 RHEBP3-201ENST00000411920 351 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 AC245291.1-201ENST00000419501 328 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 USP9YP16-201ENST00000430287 407 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 RPS15AP5-201ENST00000436276 388 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 SSXP4-201ENST00000451349 245 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 USP9YP23-201ENST00000455085 407 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 RNU7-23P-201ENST00000459465 62 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 AL133162.1-201ENST00000463228 453 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 AC087477.1-201ENST00000465747 340 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 RN7SL293P-201ENST00000481765 281 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.69□□□□□ -1.82
USP53Q70EK8 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.69□□□□□ -1.82
USP53Q70EK8 AC104619.4-201ENST00000510773 249 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 RNU6-794P-201ENST00000517261 64 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 HSPE1P4-201ENST00000550617 308 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 MIR5571-201ENST00000577998 113 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 AC090897.2-201ENST00000581715 130 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 AL355877.2-201ENST00000603670 358 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 AC130454.1-201ENST00000622948 401 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 U6.105-201ENST00000637379 88 ntBASIC3.69□□□□□ -1.82
USP53Q70EK8 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.69□□□□□ -1.82
USP53Q70EK8 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP53Q70EK8 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP53Q70EK8 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
USP53Q70EK8 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP53Q70EK8 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP53Q70EK8 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.68□□□□□ -1.82
USP53Q70EK8 OR56A5-201ENST00000340110 738 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 Y_RNA.64-201ENST00000362845 102 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 Y_RNA.183-201ENST00000363882 113 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 RNU6-806P-201ENST00000365147 105 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 RNU6-1318P-201ENST00000365389 103 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 Y_RNA.458-201ENST00000384240 102 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 Y_RNA.461-201ENST00000384263 103 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 Y_RNA.476-201ENST00000384347 108 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 MIR32-201ENST00000384965 70 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 MIR218-2-201ENST00000385006 110 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.68□□□□□ -1.82
USP53Q70EK8 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.68□□□□□ -1.82
USP53Q70EK8 SDAD1P3-201ENST00000427380 333 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 AC012308.1-201ENST00000451232 178 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.68□□□□□ -1.82
USP53Q70EK8 AP002884.2-201ENST00000471647 395 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 RPS4XP22-201ENST00000480755 780 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 AC010469.2-201ENST00000496412 480 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 AC016632.1-201ENST00000503994 196 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 AC067942.3-201ENST00000512025 362 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.68□□□□□ -1.82
USP53Q70EK8 RN7SKP18-201ENST00000516005 275 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 SNORD19.2-201ENST00000516978 73 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
USP53Q70EK8 AC090425.1-201ENST00000610007 140 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 MFSD8-236ENST00000641509 4050 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 AC004944.1-201ENST00000517807 3059 ntBASIC3.68□□□□□ -1.82
USP53Q70EK8 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.68□□□□□ -1.82
USP53Q70EK8 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.68□□□□□ -1.82
USP53Q70EK8 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP53Q70EK8 RBBP8P1-201ENST00000449447 1844 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP53Q70EK8 MAPK10-373ENST00000641983 6772 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP53Q70EK8 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
USP53Q70EK8 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.67□□□□□ -1.82
USP53Q70EK8 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
USP53Q70EK8 Y_RNA.288-201ENST00000364854 92 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 Y_RNA.504-201ENST00000384481 104 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 MIR153-2-201ENST00000385225 87 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 MTHFD2P2-201ENST00000407725 247 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 AL159169.1-201ENST00000421119 127 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 AC078809.1-201ENST00000427601 140 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 AC017083.1-201ENST00000428093 483 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 SNORA59A-201ENST00000459326 152 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 AC025465.3-201ENST00000510570 311 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 RNU2-53P-201ENST00000516257 147 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 HSPE1P20-201ENST00000538133 289 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.67□□□□□ -1.82
USP53Q70EK8 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.67□□□□□ -1.82
USP53Q70EK8 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.67□□□□□ -1.82
USP53Q70EK8 MIR3668-201ENST00000582138 75 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.67□□□□□ -1.82
USP53Q70EK8 AC078899.3-201ENST00000599065 212 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 U6.92-201ENST00000636464 89 ntBASIC3.67□□□□□ -1.82
USP53Q70EK8 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.67□□□□□ -1.82
USP53Q70EK8 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
USP53Q70EK8 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 177 ms