Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SNRPGP18-201ENST00000553000 214 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 AC011471.1-201ENST00000585766 187 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 RPL23AP78-201ENST00000599928 470 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 AC009229.3-201ENST00000608056 282 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 uc_338.22-201ENST00000622722 187 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 AC096644.4-201ENST00000563417 2912 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 RNU6-1040P-201ENST00000383974 107 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 MIR181A2-201ENST00000384863 110 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 MIR512-1-201ENST00000384913 84 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 AL590004.2-201ENST00000404787 371 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 MIR1289-1-201ENST00000408836 144 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 AC093151.1-201ENST00000427711 313 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 AL137792.2-201ENST00000443484 235 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 NIPA2P5-201ENST00000452282 464 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 AL583843.1-201ENST00000456070 346 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 AL163540.1-201ENST00000485382 386 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 RPS27P26-201ENST00000494583 239 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 AC083906.5-201ENST00000503722 328 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 RNU6-976P-201ENST00000516086 111 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.670-201ENST00000516255 105 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 AC107016.2-201ENST00000547968 190 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS53Q5VIR6 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
VPS53Q5VIR6 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.41□□□□□ -1.86
VPS53Q5VIR6 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS53Q5VIR6 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
VPS53Q5VIR6 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS53Q5VIR6 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS53Q5VIR6 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.4□□□□□ -1.86
VPS53Q5VIR6 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
VPS53Q5VIR6 RPL9P7-201ENST00000330965 580 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 SNORD73A-201ENST00000386062 65 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AL445529.1-201ENST00000398713 389 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 NDUFS5P4-201ENST00000412983 318 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 RNU7-187P-201ENST00000458985 68 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AC139453.3-201ENST00000493276 369 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 SMURF2P1-201ENST00000514992 481 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 RNU6-1045P-201ENST00000516321 107 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 RNU6-1213P-201ENST00000517075 94 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 SNORA31.19-201ENST00000517079 126 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AC104576.1-201ENST00000524225 88 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 HMGN2P15-201ENST00000585707 270 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AC006504.6-201ENST00000590142 199 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AC078899.3-201ENST00000599065 212 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AC024153.1-201ENST00000603103 365 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AL360085.1-201ENST00000604713 532 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AC123912.5-201ENST00000605470 343 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AC006386.2-201ENST00000624491 75 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 AC012005.1-201ENST00000624575 75 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 Z69720.2-201ENST00000624755 279 ntBASIC3.4□□□□□ -1.87
VPS53Q5VIR6 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
VPS53Q5VIR6 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.39□□□□□ -1.87
VPS53Q5VIR6 SNORA33.2-201ENST00000365413 134 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 RNU6-166P-201ENST00000384371 107 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 RNU6-851P-201ENST00000384565 107 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 RNU6-306P-201ENST00000384617 107 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 SNORA75.6-201ENST00000391318 127 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS53Q5VIR6 RNA5SP344-201ENST00000411081 104 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC098614.2-201ENST00000426040 255 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC236972.1-201ENST00000433225 199 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC025750.2-201ENST00000442609 450 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AL078601.1-201ENST00000444542 271 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC091826.1-201ENST00000514065 313 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 RN7SKP132-201ENST00000516001 208 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 SCARNA13-201ENST00000516672 275 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 NACAP3-201ENST00000552100 481 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC010653.1-201ENST00000571108 881 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC011494.1-201ENST00000596454 237 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AL355598.1-201ENST00000604169 202 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AL355802.3-201ENST00000607571 545 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC019193.3-201ENST00000609144 554 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 AC092593.1-201ENST00000515413 1815 ntBASIC3.39□□□□□ -1.87
VPS53Q5VIR6 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS53Q5VIR6 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS53Q5VIR6 RNU6-1115P-201ENST00000362490 106 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 Y_RNA.216-201ENST00000364205 93 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 Y_RNA.404-201ENST00000383978 102 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 RNU6-890P-201ENST00000384121 107 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 RNU6-738P-201ENST00000384531 106 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 MIR606-201ENST00000384851 96 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms