Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.08□□□□□ -1.76
LIG3P49916 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.08□□□□□ -1.76
LIG3P49916 snoU13.28-201ENST00000459235 104 ntBASIC4.08□□□□□ -1.76
LIG3P49916 AP001025.1-201ENST00000486139 332 ntBASIC4.08□□□□□ -1.76
LIG3P49916 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.08□□□□□ -1.76
LIG3P49916 RPL29P14-201ENST00000495837 428 ntBASIC4.08□□□□□ -1.76
LIG3P49916 AC026784.1-201ENST00000507986 352 ntBASIC4.08□□□□□ -1.76
LIG3P49916 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIG3P49916 FTH1P9-201ENST00000513251 355 ntBASIC4.08□□□□□ -1.76
LIG3P49916 AC026402.1-201ENST00000513642 170 ntBASIC4.08□□□□□ -1.76
LIG3P49916 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.08□□□□□ -1.76
LIG3P49916 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.08□□□□□ -1.76
LIG3P49916 HMGN2P15-201ENST00000585707 270 ntBASIC4.08□□□□□ -1.76
LIG3P49916 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.08□□□□□ -1.76
LIG3P49916 AL020997.2-201ENST00000602607 184 ntBASIC4.08□□□□□ -1.76
LIG3P49916 AC005296.1-201ENST00000616145 209 ntBASIC4.08□□□□□ -1.76
LIG3P49916 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.08□□□□□ -1.76
LIG3P49916 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIG3P49916 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.08□□□□□ -1.76
LIG3P49916 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
LIG3P49916 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.07□□□□□ -1.76
LIG3P49916 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.07□□□□□ -1.76
LIG3P49916 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIG3P49916 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIG3P49916 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.07□□□□□ -1.76
LIG3P49916 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIG3P49916 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
LIG3P49916 RNU6-200P-201ENST00000364743 107 ntBASIC4.07□□□□□ -1.76
LIG3P49916 RNU6-209P-201ENST00000384118 107 ntBASIC4.07□□□□□ -1.76
LIG3P49916 MIR184-201ENST00000384962 84 ntBASIC4.07□□□□□ -1.76
LIG3P49916 RNA5SP213-201ENST00000391031 106 ntBASIC4.07□□□□□ -1.76
LIG3P49916 SNORD12B-201ENST00000410433 91 ntBASIC4.07□□□□□ -1.76
LIG3P49916 AL590135.1-201ENST00000422215 156 ntBASIC4.07□□□□□ -1.76
LIG3P49916 AC244670.1-201ENST00000436879 112 ntBASIC4.07□□□□□ -1.76
LIG3P49916 RPL39P29-201ENST00000447779 157 ntBASIC4.07□□□□□ -1.76
LIG3P49916 RNU7-143P-201ENST00000516781 65 ntBASIC4.07□□□□□ -1.76
LIG3P49916 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.07□□□□□ -1.76
LIG3P49916 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.07□□□□□ -1.76
LIG3P49916 AC120057.2-201ENST00000571520 271 ntBASIC4.07□□□□□ -1.76
LIG3P49916 AC025627.2-201ENST00000576220 160 ntBASIC4.07□□□□□ -1.76
LIG3P49916 MIR5695-201ENST00000579717 85 ntBASIC4.07□□□□□ -1.76
LIG3P49916 AC090897.2-201ENST00000581715 130 ntBASIC4.07□□□□□ -1.76
LIG3P49916 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIG3P49916 AL359198.2-201ENST00000611836 194 ntBASIC4.07□□□□□ -1.76
LIG3P49916 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.07□□□□□ -1.76
LIG3P49916 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.07□□□□□ -1.76
LIG3P49916 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.07□□□□□ -1.76
LIG3P49916 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.07□□□□□ -1.76
LIG3P49916 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.07□□□□□ -1.76
LIG3P49916 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.07□□□□□ -1.76
LIG3P49916 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIG3P49916 AC004944.1-201ENST00000517807 3059 ntBASIC4.06□□□□□ -1.76
LIG3P49916 RNA5SP361-201ENST00000362686 118 ntBASIC4.06□□□□□ -1.76
LIG3P49916 Y_RNA.54-201ENST00000362766 105 ntBASIC4.06□□□□□ -1.76
LIG3P49916 SNORD35B-201ENST00000363660 87 ntBASIC4.06□□□□□ -1.76
LIG3P49916 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
LIG3P49916 SNORD63-201ENST00000384262 68 ntBASIC4.06□□□□□ -1.76
LIG3P49916 Y_RNA.541-201ENST00000384640 113 ntBASIC4.06□□□□□ -1.76
LIG3P49916 MIR10B-201ENST00000385011 110 ntBASIC4.06□□□□□ -1.76
LIG3P49916 AL603910.2-201ENST00000407268 136 ntBASIC4.06□□□□□ -1.76
LIG3P49916 MIR548I3-201ENST00000408378 149 ntBASIC4.06□□□□□ -1.76
LIG3P49916 MIR548I1-201ENST00000408810 149 ntBASIC4.06□□□□□ -1.76
LIG3P49916 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.06□□□□□ -1.76
LIG3P49916 AL161651.1-201ENST00000440882 223 ntBASIC4.06□□□□□ -1.76
LIG3P49916 RNU6-138P-201ENST00000515952 107 ntBASIC4.06□□□□□ -1.76
LIG3P49916 RNA5SP309-201ENST00000516670 106 ntBASIC4.06□□□□□ -1.76
LIG3P49916 AP006245.1-201ENST00000522549 120 ntBASIC4.06□□□□□ -1.76
LIG3P49916 AC010900.2-201ENST00000604508 210 ntBASIC4.06□□□□□ -1.76
LIG3P49916 MIR6868-201ENST00000611215 58 ntBASIC4.06□□□□□ -1.76
LIG3P49916 RNVU1-4-201ENST00000612985 164 ntBASIC4.06□□□□□ -1.76
LIG3P49916 MIR6875-201ENST00000617506 72 ntBASIC4.06□□□□□ -1.76
LIG3P49916 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.06□□□□□ -1.76
LIG3P49916 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.06□□□□□ -1.76
LIG3P49916 RBBP8P1-201ENST00000449447 1844 ntBASIC4.06□□□□□ -1.76
LIG3P49916 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.06□□□□□ -1.76
LIG3P49916 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIG3P49916 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
LIG3P49916 AL133383.2-201ENST00000622958 2336 ntBASIC4.06□□□□□ -1.76
LIG3P49916 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
LIG3P49916 UBE3AP2-201ENST00000429033 2259 ntBASIC4.06□□□□□ -1.76
LIG3P49916 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIG3P49916 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIG3P49916 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIG3P49916 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
LIG3P49916 Y_RNA.16-201ENST00000362421 102 ntBASIC4.05□□□□□ -1.76
LIG3P49916 RNU6-338P-201ENST00000383888 105 ntBASIC4.05□□□□□ -1.76
LIG3P49916 RNU6-622P-201ENST00000384272 103 ntBASIC4.05□□□□□ -1.76
LIG3P49916 Y_RNA.539-201ENST00000384635 107 ntBASIC4.05□□□□□ -1.76
LIG3P49916 RNU6-159P-201ENST00000391080 106 ntBASIC4.05□□□□□ -1.76
LIG3P49916 AL691449.1-201ENST00000426570 421 ntBASIC4.05□□□□□ -1.76
LIG3P49916 WARS2P1-201ENST00000429678 537 ntBASIC4.05□□□□□ -1.76
LIG3P49916 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
LIG3P49916 AL139109.1-201ENST00000455491 297 ntBASIC4.05□□□□□ -1.76
LIG3P49916 RNU6-496P-201ENST00000516145 99 ntBASIC4.05□□□□□ -1.76
LIG3P49916 RN7SKP49-201ENST00000516675 260 ntBASIC4.05□□□□□ -1.76
LIG3P49916 MIR3186-201ENST00000577404 85 ntBASIC4.05□□□□□ -1.76
LIG3P49916 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.05□□□□□ -1.76
LIG3P49916 AC009779.6-201ENST00000603972 165 ntBASIC4.05□□□□□ -1.76
LIG3P49916 BX284668.6-201ENST00000606899 438 ntBASIC4.05□□□□□ -1.76
LIG3P49916 AL450472.1-202ENST00000637286 180 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms