Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.33□□□□□ -2.04
SOX3P41225 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.33□□□□□ -2.04
SOX3P41225 CASC19-280ENST00000642102 1351 ntBASIC2.33□□□□□ -2.04
SOX3P41225 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
SOX3P41225 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
SOX3P41225 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
SOX3P41225 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.33□□□□□ -2.04
SOX3P41225 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.32□□□□□ -2.04
SOX3P41225 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.32□□□□□ -2.04
SOX3P41225 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
SOX3P41225 RNU6-858P-201ENST00000362436 107 ntBASIC2.32□□□□□ -2.04
SOX3P41225 SNORA68.1-201ENST00000364537 132 ntBASIC2.32□□□□□ -2.04
SOX3P41225 U8.8-201ENST00000365399 135 ntBASIC2.32□□□□□ -2.04
SOX3P41225 SNORD116-20-201ENST00000384529 92 ntBASIC2.32□□□□□ -2.04
SOX3P41225 MIR147B-201ENST00000390185 80 ntBASIC2.32□□□□□ -2.04
SOX3P41225 RNU6-1148P-201ENST00000410992 104 ntBASIC2.32□□□□□ -2.04
SOX3P41225 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.32□□□□□ -2.04
SOX3P41225 AC074117.2-201ENST00000417130 397 ntBASIC2.32□□□□□ -2.04
SOX3P41225 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.32□□□□□ -2.04
SOX3P41225 AL365400.1-201ENST00000431854 640 ntBASIC2.32□□□□□ -2.04
SOX3P41225 RPS12P2-201ENST00000439728 269 ntBASIC2.32□□□□□ -2.04
SOX3P41225 AL513328.1-201ENST00000446460 224 ntBASIC2.32□□□□□ -2.04
SOX3P41225 MED28P2-201ENST00000475771 317 ntBASIC2.32□□□□□ -2.04
SOX3P41225 RPL7P43-201ENST00000478876 753 ntBASIC2.32□□□□□ -2.04
SOX3P41225 AC018710.1-201ENST00000506509 158 ntBASIC2.32□□□□□ -2.04
SOX3P41225 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.32□□□□□ -2.04
SOX3P41225 RNU6-377P-201ENST00000515965 102 ntBASIC2.32□□□□□ -2.04
SOX3P41225 SCARNA17.1-201ENST00000516211 143 ntBASIC2.32□□□□□ -2.04
SOX3P41225 SNORA31.6-201ENST00000516241 130 ntBASIC2.32□□□□□ -2.04
SOX3P41225 SCARNA17.2-201ENST00000516334 143 ntBASIC2.32□□□□□ -2.04
SOX3P41225 RNU6-323P-201ENST00000521915 107 ntBASIC2.32□□□□□ -2.04
SOX3P41225 AP000763.2-201ENST00000540641 163 ntBASIC2.32□□□□□ -2.04
SOX3P41225 RNU6-91P-201ENST00000607774 107 ntBASIC2.32□□□□□ -2.04
SOX3P41225 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.32□□□□□ -2.04
SOX3P41225 SCARNA17.4-201ENST00000614296 143 ntBASIC2.32□□□□□ -2.04
SOX3P41225 FAM157A-202ENST00000615155 405 ntBASIC2.32□□□□□ -2.04
SOX3P41225 U4.3-201ENST00000621047 82 ntBASIC2.32□□□□□ -2.04
SOX3P41225 DUXAP9-208ENST00000622815 614 ntBASIC2.32□□□□□ -2.04
SOX3P41225 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.32□□□□□ -2.04
SOX3P41225 MIR3529-201ENST00000637713 78 ntBASIC2.32□□□□□ -2.04
SOX3P41225 HAUS6P2-201ENST00000433254 2404 ntBASIC2.32□□□□□ -2.04
SOX3P41225 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
SOX3P41225 AC080100.1-201ENST00000624239 5356 ntBASIC2.32□□□□□ -2.04
SOX3P41225 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
SOX3P41225 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.31□□□□□ -2.04
SOX3P41225 RNU6-1180P-201ENST00000364935 107 ntBASIC2.31□□□□□ -2.04
SOX3P41225 Y_RNA.414-201ENST00000384011 101 ntBASIC2.31□□□□□ -2.04
SOX3P41225 MT-TL1-201ENST00000386347 75 ntBASIC2.31□□□□□ -2.04
SOX3P41225 MIR450B-201ENST00000401182 78 ntBASIC2.31□□□□□ -2.04
SOX3P41225 AL356776.1-201ENST00000406574 447 ntBASIC2.31□□□□□ -2.04
SOX3P41225 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.31□□□□□ -2.04
SOX3P41225 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.31□□□□□ -2.04
SOX3P41225 AL359672.1-201ENST00000442302 409 ntBASIC2.31□□□□□ -2.04
SOX3P41225 AL441985.1-201ENST00000457727 251 ntBASIC2.31□□□□□ -2.04
SOX3P41225 TRBVA-201ENST00000498804 316 ntBASIC2.31□□□□□ -2.04
SOX3P41225 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.31□□□□□ -2.04
SOX3P41225 AC010486.1-201ENST00000511793 424 ntBASIC2.31□□□□□ -2.04
SOX3P41225 SNORA31.23-201ENST00000517219 133 ntBASIC2.31□□□□□ -2.04
SOX3P41225 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.31□□□□□ -2.04
SOX3P41225 MIR5092-201ENST00000583139 88 ntBASIC2.31□□□□□ -2.04
SOX3P41225 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.31□□□□□ -2.04
SOX3P41225 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.31□□□□□ -2.04
SOX3P41225 MIR7515-201ENST00000637837 67 ntBASIC2.31□□□□□ -2.04
SOX3P41225 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.31□□□□□ -2.04
SOX3P41225 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.31□□□□□ -2.04
SOX3P41225 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
SOX3P41225 RNU6-487P-201ENST00000365430 104 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.3□□□□□ -2.04
SOX3P41225 RNU6-831P-201ENST00000384548 107 ntBASIC2.3□□□□□ -2.04
SOX3P41225 MIR518C-201ENST00000384822 101 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AC009963.1-201ENST00000417265 157 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AL117339.3-201ENST00000418733 162 ntBASIC2.3□□□□□ -2.04
SOX3P41225 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.3□□□□□ -2.04
SOX3P41225 CR769767.1-201ENST00000436337 346 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.3□□□□□ -2.04
SOX3P41225 AP001025.1-201ENST00000486139 332 ntBASIC2.3□□□□□ -2.04
SOX3P41225 MTCO2P30-201ENST00000503662 364 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AC116353.2-201ENST00000505332 712 ntBASIC2.3□□□□□ -2.04
SOX3P41225 RN7SKP256-201ENST00000517201 314 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.3□□□□□ -2.04
SOX3P41225 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.3□□□□□ -2.04
SOX3P41225 AP005597.4-201ENST00000526762 229 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AC100830.2-201ENST00000581636 240 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AL121917.1-203ENST00000605534 577 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.3□□□□□ -2.04
SOX3P41225 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.3□□□□□ -2.04
SOX3P41225 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SOX3P41225 AL136221.1-201ENST00000621449 509 ntBASIC2.3□□□□□ -2.04
SOX3P41225 AC099654.14-201ENST00000638599 341 ntBASIC2.3□□□□□ -2.04
SOX3P41225 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SOX3P41225 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
SOX3P41225 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
SOX3P41225 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.29□□□□□ -2.04
SOX3P41225 AL109809.4-201ENST00000603520 2185 ntBASIC2.29□□□□□ -2.04
SOX3P41225 AC138915.1-201ENST00000565427 1685 ntBASIC2.29□□□□□ -2.04
SOX3P41225 Y_RNA.72-201ENST00000362894 103 ntBASIC2.29□□□□□ -2.04
SOX3P41225 Y_RNA.303-201ENST00000364998 94 ntBASIC2.29□□□□□ -2.04
SOX3P41225 RNU6-1329P-201ENST00000365664 107 ntBASIC2.29□□□□□ -2.04
SOX3P41225 RNU6-1083P-201ENST00000384022 107 ntBASIC2.29□□□□□ -2.04
SOX3P41225 SNORD73A-201ENST00000386062 65 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms