Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
BRCA1P38398 RNY1P12-201ENST00000364251 105 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 RNU6-234P-201ENST00000365229 104 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 RNU2-48P-201ENST00000410694 191 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 UBE2V1P10-201ENST00000414685 269 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 RPL31P63-201ENST00000422565 375 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 AL356583.2-201ENST00000426536 280 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 AL591212.2-201ENST00000433923 257 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 GPM6BP3-201ENST00000442797 145 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 MTND5P2-201ENST00000442927 1142 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 MTND6P13-201ENST00000443510 523 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 MTND2P39-201ENST00000457230 764 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 BZW1P2-201ENST00000473537 826 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.52□□□□□ -2.17
BRCA1P38398 AP000797.1-201ENST00000478870 387 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 AP001025.1-201ENST00000486139 332 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 MTCO3P9-201ENST00000506989 781 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.52□□□□□ -2.17
BRCA1P38398 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.52□□□□□ -2.17
BRCA1P38398 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.52□□□□□ -2.17
BRCA1P38398 SNORA3.4-201ENST00000515969 96 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 RNU2-53P-201ENST00000516257 147 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.52□□□□□ -2.17
BRCA1P38398 MTATP6P15-201ENST00000527233 835 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 TMF1P1-201ENST00000576058 373 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 AC005034.5-201ENST00000604219 466 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 AL022345.1-201ENST00000607292 135 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.52□□□□□ -2.17
BRCA1P38398 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.52□□□□□ -2.17
BRCA1P38398 MIR3529-201ENST00000637713 78 ntBASIC1.52□□□□□ -2.17
BRCA1P38398 MIR373-201ENST00000362273 69 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 RNU6-487P-201ENST00000365430 104 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
BRCA1P38398 RNU2-3P-201ENST00000410144 191 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 RNU2-32P-201ENST00000411193 191 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 AL158823.1-201ENST00000418441 478 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.51□□□□□ -2.17
BRCA1P38398 RPL23AP6-201ENST00000446637 472 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.51□□□□□ -2.17
BRCA1P38398 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.51□□□□□ -2.17
BRCA1P38398 snoU109.2-201ENST00000459316 135 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 snoU13.14-201ENST00000459372 104 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 RNU6-914P-201ENST00000516749 109 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 MTND4LP18-201ENST00000526864 291 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC1.51□□□□□ -2.17
BRCA1P38398 MIR3122-201ENST00000577243 73 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 MIR5697-201ENST00000578045 78 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 MIR3908-201ENST00000579798 126 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 AL359314.1-201ENST00000616913 261 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 AC024940.5-201ENST00000622889 474 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 AC092656.1-203ENST00000624134 423 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 SCARNA4-202ENST00000625402 129 ntBASIC1.51□□□□□ -2.17
BRCA1P38398 RNU6-1010P-201ENST00000362757 107 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 RNU6-61P-201ENST00000365528 109 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
BRCA1P38398 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.5□□□□□ -2.17
BRCA1P38398 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.5□□□□□ -2.17
BRCA1P38398 CALM2P2-201ENST00000428512 440 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.5□□□□□ -2.17
BRCA1P38398 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.5□□□□□ -2.17
BRCA1P38398 MTCO2P29-201ENST00000465212 189 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 RNA5SP61-201ENST00000516453 100 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 RNU7-193P-201ENST00000516723 65 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.5□□□□□ -2.17
BRCA1P38398 BNIP3P6-201ENST00000549284 499 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AC093249.1-201ENST00000567049 203 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 BNIP3P40-201ENST00000596017 556 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AC073413.2-201ENST00000604332 360 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AL139286.2-201ENST00000606838 396 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AC092106.3-201ENST00000611308 722 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AL607023.1-201ENST00000620045 248 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.5□□□□□ -2.17
BRCA1P38398 OR4G3P-201ENST00000633500 913 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 MTND5P10-201ENST00000603719 1809 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 Y_RNA.33-201ENST00000362591 102 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.5□□□□□ -2.17
BRCA1P38398 SNORA18.2-201ENST00000383865 132 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
BRCA1P38398 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC1.5□□□□□ -2.17
BRCA1P38398 ELOCP4-201ENST00000420090 333 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 Z99497.1-201ENST00000421282 135 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AL593851.1-201ENST00000426171 157 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.5□□□□□ -2.17
BRCA1P38398 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC1.5□□□□□ -2.17
BRCA1P38398 MTND1P12-201ENST00000455231 147 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC1.5□□□□□ -2.17
BRCA1P38398 AC107032.1-201ENST00000485945 480 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 HMGB3P17-201ENST00000504195 649 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.5□□□□□ -2.17
BRCA1P38398 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC1.5□□□□□ -2.17
BRCA1P38398 SNORA48.11-201ENST00000517015 89 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.5□□□□□ -2.17
BRCA1P38398 AL356432.3-201ENST00000568952 465 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AC105148.1-201ENST00000604961 409 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 BCRP9-201ENST00000605312 388 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 SNORD14A-201ENST00000606526 91 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 AP002360.4-201ENST00000606980 481 ntBASIC1.5□□□□□ -2.17
BRCA1P38398 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.49□□□□□ -2.17
BRCA1P38398 Y_RNA.295-201ENST00000364918 102 ntBASIC1.49□□□□□ -2.17
BRCA1P38398 CBX3P9-201ENST00000402326 552 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms