Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.44□□□□□ -1.86
MSX2P35548 MIR6867-201ENST00000610636 67 ntBASIC3.44□□□□□ -1.86
MSX2P35548 AC068831.7-201ENST00000616954 363 ntBASIC3.44□□□□□ -1.86
MSX2P35548 AC002076.2-201ENST00000617362 122 ntBASIC3.44□□□□□ -1.86
MSX2P35548 SCARNA4-202ENST00000625402 129 ntBASIC3.44□□□□□ -1.86
MSX2P35548 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
MSX2P35548 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSX2P35548 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.44□□□□□ -1.86
MSX2P35548 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
MSX2P35548 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.44□□□□□ -1.86
MSX2P35548 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSX2P35548 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.44□□□□□ -1.86
MSX2P35548 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
MSX2P35548 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
MSX2P35548 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
MSX2P35548 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
MSX2P35548 AL513302.2-201ENST00000562313 1842 ntBASIC3.43□□□□□ -1.86
MSX2P35548 Y_RNA.143-201ENST00000363520 106 ntBASIC3.43□□□□□ -1.86
MSX2P35548 Y_RNA.180-201ENST00000363867 113 ntBASIC3.43□□□□□ -1.86
MSX2P35548 RNU6-280P-201ENST00000364145 104 ntBASIC3.43□□□□□ -1.86
MSX2P35548 AL359837.1-201ENST00000381357 287 ntBASIC3.43□□□□□ -1.86
MSX2P35548 Z98749.2-208ENST00000381646 500 ntBASIC3.43□□□□□ -1.86
MSX2P35548 AL079342.1-201ENST00000401460 267 ntBASIC3.43□□□□□ -1.86
MSX2P35548 RNA5SP31-201ENST00000411144 127 ntBASIC3.43□□□□□ -1.86
MSX2P35548 AL139156.1-201ENST00000412785 841 ntBASIC3.43□□□□□ -1.86
MSX2P35548 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.43□□□□□ -1.86
MSX2P35548 TOMM22P6-201ENST00000465035 409 ntBASIC3.43□□□□□ -1.86
MSX2P35548 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.43□□□□□ -1.86
MSX2P35548 RPL21P129-201ENST00000491732 478 ntBASIC3.43□□□□□ -1.86
MSX2P35548 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.43□□□□□ -1.86
MSX2P35548 RNU4-71P-201ENST00000516258 113 ntBASIC3.43□□□□□ -1.86
MSX2P35548 RNU6-406P-201ENST00000516470 107 ntBASIC3.43□□□□□ -1.86
MSX2P35548 MIR2276-201ENST00000516886 89 ntBASIC3.43□□□□□ -1.86
MSX2P35548 RNU6-703P-201ENST00000516946 107 ntBASIC3.43□□□□□ -1.86
MSX2P35548 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.43□□□□□ -1.86
MSX2P35548 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.43□□□□□ -1.86
MSX2P35548 CYCSP39-201ENST00000565821 309 ntBASIC3.43□□□□□ -1.86
MSX2P35548 AC090617.3-201ENST00000573670 475 ntBASIC3.43□□□□□ -1.86
MSX2P35548 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.43□□□□□ -1.86
MSX2P35548 MIR92B-201ENST00000607575 96 ntBASIC3.43□□□□□ -1.86
MSX2P35548 AC240442.1-201ENST00000616055 283 ntBASIC3.43□□□□□ -1.86
MSX2P35548 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.43□□□□□ -1.86
MSX2P35548 AC022149.2-201ENST00000621061 203 ntBASIC3.43□□□□□ -1.86
MSX2P35548 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.43□□□□□ -1.86
MSX2P35548 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
MSX2P35548 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
MSX2P35548 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
MSX2P35548 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.42□□□□□ -1.86
MSX2P35548 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSX2P35548 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSX2P35548 Y_RNA.29-201ENST00000362570 113 ntBASIC3.42□□□□□ -1.86
MSX2P35548 Y_RNA.277-201ENST00000364754 102 ntBASIC3.42□□□□□ -1.86
MSX2P35548 RNU4-9P-201ENST00000364951 139 ntBASIC3.42□□□□□ -1.86
MSX2P35548 SNORA1.3-201ENST00000384676 136 ntBASIC3.42□□□□□ -1.86
MSX2P35548 RPS4XP3-201ENST00000398541 413 ntBASIC3.42□□□□□ -1.86
MSX2P35548 MIR548M-201ENST00000408260 86 ntBASIC3.42□□□□□ -1.86
MSX2P35548 RNU6-628P-201ENST00000410675 107 ntBASIC3.42□□□□□ -1.86
MSX2P35548 AC092047.1-201ENST00000424997 240 ntBASIC3.42□□□□□ -1.86
MSX2P35548 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.42□□□□□ -1.86
MSX2P35548 RPL21P40-201ENST00000428586 483 ntBASIC3.42□□□□□ -1.86
MSX2P35548 CYCSP32-201ENST00000440548 321 ntBASIC3.42□□□□□ -1.86
MSX2P35548 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.42□□□□□ -1.86
MSX2P35548 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.42□□□□□ -1.86
MSX2P35548 RPS4XP2-201ENST00000458402 793 ntBASIC3.42□□□□□ -1.86
MSX2P35548 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.42□□□□□ -1.86
MSX2P35548 MRPS36P4-201ENST00000534436 298 ntBASIC3.42□□□□□ -1.86
MSX2P35548 AC010186.2-204ENST00000537668 439 ntBASIC3.42□□□□□ -1.86
MSX2P35548 AC025884.1-201ENST00000556034 378 ntBASIC3.42□□□□□ -1.86
MSX2P35548 AC034105.4-201ENST00000568304 277 ntBASIC3.42□□□□□ -1.86
MSX2P35548 BX284668.6-201ENST00000606899 438 ntBASIC3.42□□□□□ -1.86
MSX2P35548 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.42□□□□□ -1.86
MSX2P35548 AC004792.1-201ENST00000614523 137 ntBASIC3.42□□□□□ -1.86
MSX2P35548 MIR6076-201ENST00000617521 113 ntBASIC3.42□□□□□ -1.86
MSX2P35548 SCARNA4-201ENST00000629045 128 ntBASIC3.42□□□□□ -1.86
MSX2P35548 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.42□□□□□ -1.86
MSX2P35548 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSX2P35548 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSX2P35548 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
MSX2P35548 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.42□□□□□ -1.86
MSX2P35548 AC007256.1-201ENST00000392253 2765 ntBASIC3.41□□□□□ -1.86
MSX2P35548 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSX2P35548 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
MSX2P35548 RNU6-222P-201ENST00000362438 107 ntBASIC3.41□□□□□ -1.86
MSX2P35548 RNU6-1301P-201ENST00000362724 104 ntBASIC3.41□□□□□ -1.86
MSX2P35548 RNU6-1266P-201ENST00000362794 105 ntBASIC3.41□□□□□ -1.86
MSX2P35548 Y_RNA.65-201ENST00000362846 100 ntBASIC3.41□□□□□ -1.86
MSX2P35548 Y_RNA.297-201ENST00000364950 91 ntBASIC3.41□□□□□ -1.86
MSX2P35548 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.41□□□□□ -1.86
MSX2P35548 BTF3L4P2-201ENST00000392798 346 ntBASIC3.41□□□□□ -1.86
MSX2P35548 RPL21P65-201ENST00000406094 466 ntBASIC3.41□□□□□ -1.86
MSX2P35548 AL356095.1-201ENST00000417217 199 ntBASIC3.41□□□□□ -1.86
MSX2P35548 AP000907.1-201ENST00000428428 510 ntBASIC3.41□□□□□ -1.86
MSX2P35548 OR4C10P-201ENST00000434991 931 ntBASIC3.41□□□□□ -1.86
MSX2P35548 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.41□□□□□ -1.86
MSX2P35548 snoU13.30-201ENST00000458951 104 ntBASIC3.41□□□□□ -1.86
MSX2P35548 SNORA84-201ENST00000459229 133 ntBASIC3.41□□□□□ -1.86
MSX2P35548 SNORA43.2-201ENST00000516652 128 ntBASIC3.41□□□□□ -1.86
MSX2P35548 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.41□□□□□ -1.86
MSX2P35548 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.41□□□□□ -1.86
MSX2P35548 AC026333.2-201ENST00000542164 106 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms