Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD3P31249 AC074117.2-201ENST00000417130 397 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 EIF4EP2-201ENST00000422816 654 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 AC092423.1-201ENST00000430165 186 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 MTCO3P29-201ENST00000432119 779 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD3P31249 AL591043.1-201ENST00000432461 424 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 AC099799.1-201ENST00000439809 192 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXD3P31249 RN7SL807P-201ENST00000470923 297 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 AC128713.1-201ENST00000471495 306 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD3P31249 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXD3P31249 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD3P31249 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXD3P31249 AC093331.1-201ENST00000521474 169 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD3P31249 CR383656.8-201ENST00000549046 145 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXD3P31249 AC087588.2-201ENST00000617667 426 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 AL078596.1-201ENST00000624856 447 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 AC138305.3-201ENST00000624988 240 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 AL606534.2-204ENST00000635008 178 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
HOXD3P31249 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD3P31249 MTND5P7-201ENST00000413558 1798 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.68□□□□□ -1.98
HOXD3P31249 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD3P31249 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXD3P31249 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC2.68□□□□□ -1.98
HOXD3P31249 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXD3P31249 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD3P31249 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
HOXD3P31249 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD3P31249 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD3P31249 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC2.67□□□□□ -1.98
HOXD3P31249 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD3P31249 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD3P31249 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD3P31249 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD3P31249 Y_RNA.153-201ENST00000363615 91 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 RNU1-140P-201ENST00000365040 165 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 RNU6-198P-201ENST00000384258 104 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 RNU6-784P-201ENST00000384330 106 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 U3.19-201ENST00000390893 196 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 SNORD17-201ENST00000390930 237 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 HMGB3P2-201ENST00000411913 584 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.67□□□□□ -1.98
HOXD3P31249 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.67□□□□□ -1.98
HOXD3P31249 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD3P31249 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 RBMY2UP-201ENST00000453474 324 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 SNRPGP7-201ENST00000469016 106 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 AC114801.2-201ENST00000503825 781 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD3P31249 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD3P31249 AC006199.1-201ENST00000548728 219 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 NACAP3-201ENST00000552100 481 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 HSBP1P1-201ENST00000555205 166 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 MIR5701-3-201ENST00000578890 82 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 MIR5701-1-201ENST00000585138 82 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 AC006557.5-201ENST00000603126 811 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 MIR5701-2-201ENST00000615634 82 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 AL132822.1-201ENST00000617063 513 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 U7.8-201ENST00000619968 63 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 SCARNA15.3-201ENST00000626315 122 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 SCARNA4.1-201ENST00000628597 123 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 AC244205.2-202ENST00000635781 342 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD3P31249 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD3P31249 AC110491.1-201ENST00000562191 2010 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 AC009541.1-201ENST00000438279 2662 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD3P31249 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.67□□□□□ -1.98
HOXD3P31249 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD3P31249 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD3P31249 MFSD8-233ENST00000641482 4860 ntBASIC2.67□□□□□ -1.98
HOXD3P31249 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD3P31249 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
HOXD3P31249 RNU4-42P-201ENST00000364738 142 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 AC117470.1-201ENST00000381974 330 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 CD24P4-201ENST00000382840 243 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 Y_RNA.389-201ENST00000383924 113 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 Y_RNA.557-201ENST00000384680 107 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 BTF3L4P2-201ENST00000392798 346 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 AP000275.1-201ENST00000411943 390 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXD3P31249 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD3P31249 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD3P31249 Z82188.1-201ENST00000436709 154 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 AC007969.2-201ENST00000441891 191 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 U8.20-201ENST00000459445 131 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 SNORA31.23-201ENST00000517219 133 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXD3P31249 AC008269.2-201ENST00000561915 1105 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 AC004584.2-201ENST00000570407 410 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 AC113195.1-201ENST00000579952 141 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 MIR5188-201ENST00000583467 113 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD3P31249 MIR4272-201ENST00000635924 64 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms