Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.28□□□□□ -2.2
COL5A3P25940 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.28□□□□□ -2.2
COL5A3P25940 MTATP6P26-201ENST00000445926 662 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AC112204.1-201ENST00000502591 103 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AC010587.1-201ENST00000505809 469 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 MTND1P22-201ENST00000510572 951 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 SNORD19.2-201ENST00000516978 73 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 RNU6-840P-201ENST00000517275 65 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.28□□□□□ -2.2
COL5A3P25940 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC1.28□□□□□ -2.2
COL5A3P25940 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.28□□□□□ -2.2
COL5A3P25940 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC1.28□□□□□ -2.2
COL5A3P25940 AC012414.6-201ENST00000568241 401 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.28□□□□□ -2.2
COL5A3P25940 AC040904.1-201ENST00000590850 223 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AC008498.1-201ENST00000613012 531 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 TUG1_2.1-201ENST00000614234 87 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AL627230.5-201ENST00000619807 58 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AC073308.1-201ENST00000623696 305 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AC073343.1-201ENST00000328239 651 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 Y_RNA.245-201ENST00000364493 95 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 RNY4P34-201ENST00000364779 95 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
COL5A3P25940 RPL23AP32-201ENST00000395315 459 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 RNU2-8P-201ENST00000410727 190 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 RNU6-195P-201ENST00000411352 109 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 RPS3AP3-201ENST00000411933 242 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.27□□□□□ -2.21
COL5A3P25940 MTND3P17-201ENST00000416968 344 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 SEPT2P1-201ENST00000419651 180 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AC244035.1-201ENST00000430042 390 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AL445305.1-201ENST00000432577 575 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AL357134.1-201ENST00000445848 426 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AC020550.1-201ENST00000447385 163 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.27□□□□□ -2.21
COL5A3P25940 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC1.27□□□□□ -2.21
COL5A3P25940 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.27□□□□□ -2.21
COL5A3P25940 RNA5SP290-201ENST00000517133 127 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.27□□□□□ -2.21
COL5A3P25940 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.27□□□□□ -2.21
COL5A3P25940 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.27□□□□□ -2.21
COL5A3P25940 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.27□□□□□ -2.21
COL5A3P25940 ZNF519P3-201ENST00000557158 1032 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.27□□□□□ -2.21
COL5A3P25940 AC006362.1-201ENST00000567392 174 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 MIR4528-201ENST00000577763 90 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 MIR4287-201ENST00000579398 78 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 MIR3973-201ENST00000579824 107 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.27□□□□□ -2.21
COL5A3P25940 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
COL5A3P25940 BNIP3P9-201ENST00000603714 553 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AL158063.1-201ENST00000615349 536 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AL603839.4-201ENST00000624658 1005 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 AL442644.1-201ENST00000454390 3105 ntBASIC1.27□□□□□ -2.21
COL5A3P25940 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
COL5A3P25940 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.26□□□□□ -2.21
COL5A3P25940 RNY1P12-201ENST00000364251 105 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 SNORA4.3-201ENST00000365564 137 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 RNU6-533P-201ENST00000384144 107 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 SNORD116-2-201ENST00000384274 95 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 SNORD116-6-201ENST00000384711 96 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 MIR216A-201ENST00000385063 110 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 CIR1P3-201ENST00000405137 479 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.26□□□□□ -2.21
COL5A3P25940 EBAG9P1-201ENST00000418955 543 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 BPY2DP-201ENST00000422208 265 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC1.26□□□□□ -2.21
COL5A3P25940 DDX3P2-201ENST00000446138 111 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 RPS29P23-201ENST00000458635 123 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.26□□□□□ -2.21
COL5A3P25940 AC026801.1-201ENST00000497178 464 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.26□□□□□ -2.21
COL5A3P25940 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.26□□□□□ -2.21
COL5A3P25940 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.26□□□□□ -2.21
COL5A3P25940 RNU6-143P-201ENST00000516942 93 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC1.26□□□□□ -2.21
COL5A3P25940 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.26□□□□□ -2.21
COL5A3P25940 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC1.26□□□□□ -2.21
COL5A3P25940 AC121247.2-201ENST00000604776 136 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 AC098614.4-201ENST00000607601 462 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 AC010889.1-201ENST00000566193 2666 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
COL5A3P25940 Y_RNA.77-201ENST00000362962 107 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 RNU6-960P-201ENST00000364056 120 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 RNU5A-8P-201ENST00000364102 114 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 Y_RNA.294-201ENST00000364916 102 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
COL5A3P25940 MIR150-201ENST00000385048 84 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 MIR1302-8-201ENST00000408342 128 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 RNU6-1328P-201ENST00000410938 106 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 AC023141.4-201ENST00000412031 328 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 ELOCP14-201ENST00000428070 331 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.26□□□□□ -2.21
COL5A3P25940 AL512844.2-201ENST00000433990 593 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 AC009961.2-201ENST00000435771 251 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 ELOCP7-201ENST00000439968 331 ntBASIC1.26□□□□□ -2.21
COL5A3P25940 MTND4P25-201ENST00000441039 533 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms