Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC234772.3-201ENST00000602277 528 ntBASIC1.49□□□□□ -2.17
USF1P22415 AL136363.2-201ENST00000604173 851 ntBASIC1.49□□□□□ -2.17
USF1P22415 CLPTM1LP1-201ENST00000604519 484 ntBASIC1.49□□□□□ -2.17
USF1P22415 U1.36-201ENST00000620684 176 ntBASIC1.49□□□□□ -2.17
USF1P22415 AC138649.3-201ENST00000622154 254 ntBASIC1.49□□□□□ -2.17
USF1P22415 AL359740.1-201ENST00000624340 592 ntBASIC1.49□□□□□ -2.17
USF1P22415 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
USF1P22415 MIR337-201ENST00000362281 93 ntBASIC1.48□□□□□ -2.17
USF1P22415 snoU2_19.1-201ENST00000362361 80 ntBASIC1.48□□□□□ -2.17
USF1P22415 RNU6-78P-201ENST00000362897 107 ntBASIC1.48□□□□□ -2.17
USF1P22415 RNU4-42P-201ENST00000364738 142 ntBASIC1.48□□□□□ -2.17
USF1P22415 RNU5E-7P-201ENST00000365290 117 ntBASIC1.48□□□□□ -2.17
USF1P22415 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.48□□□□□ -2.17
USF1P22415 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
USF1P22415 AL033519.2-201ENST00000403958 392 ntBASIC1.48□□□□□ -2.17
USF1P22415 RPS20P15-201ENST00000412792 311 ntBASIC1.48□□□□□ -2.17
USF1P22415 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.48□□□□□ -2.17
USF1P22415 C1DP2-201ENST00000418167 426 ntBASIC1.48□□□□□ -2.17
USF1P22415 AC011233.1-201ENST00000422812 283 ntBASIC1.48□□□□□ -2.17
USF1P22415 MTND4P20-201ENST00000424125 869 ntBASIC1.48□□□□□ -2.17
USF1P22415 CBX3P6-201ENST00000430257 527 ntBASIC1.48□□□□□ -2.17
USF1P22415 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC1.48□□□□□ -2.17
USF1P22415 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC1.48□□□□□ -2.17
USF1P22415 FABP5P5-201ENST00000515537 406 ntBASIC1.48□□□□□ -2.17
USF1P22415 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.48□□□□□ -2.17
USF1P22415 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.48□□□□□ -2.17
USF1P22415 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.48□□□□□ -2.17
USF1P22415 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.48□□□□□ -2.17
USF1P22415 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC1.48□□□□□ -2.17
USF1P22415 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.48□□□□□ -2.17
USF1P22415 AC024614.2-201ENST00000577584 372 ntBASIC1.48□□□□□ -2.17
USF1P22415 MIR4713-201ENST00000582691 75 ntBASIC1.48□□□□□ -2.17
USF1P22415 AC078795.2-201ENST00000602835 1252 ntBASIC1.48□□□□□ -2.17
USF1P22415 AL022161.1-201ENST00000604390 213 ntBASIC1.48□□□□□ -2.17
USF1P22415 AL050303.3-201ENST00000613704 284 ntBASIC1.48□□□□□ -2.17
USF1P22415 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.48□□□□□ -2.17
USF1P22415 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.48□□□□□ -2.17
USF1P22415 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USF1P22415 RNU6-1164P-201ENST00000364428 107 ntBASIC1.47□□□□□ -2.17
USF1P22415 RNU6-169P-201ENST00000365336 107 ntBASIC1.47□□□□□ -2.17
USF1P22415 BTF3L4P2-201ENST00000392798 346 ntBASIC1.47□□□□□ -2.17
USF1P22415 BTF3P4-201ENST00000418852 495 ntBASIC1.47□□□□□ -2.17
USF1P22415 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.47□□□□□ -2.17
USF1P22415 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.47□□□□□ -2.17
USF1P22415 UBE2V1P4-201ENST00000425374 344 ntBASIC1.47□□□□□ -2.17
USF1P22415 RPS15AP10-201ENST00000432472 382 ntBASIC1.47□□□□□ -2.17
USF1P22415 MTATP6P16-201ENST00000434543 526 ntBASIC1.47□□□□□ -2.17
USF1P22415 IFNA20P-201ENST00000436840 528 ntBASIC1.47□□□□□ -2.17
USF1P22415 HSPE1P21-201ENST00000438283 308 ntBASIC1.47□□□□□ -2.17
USF1P22415 AC007969.2-201ENST00000441891 191 ntBASIC1.47□□□□□ -2.17
USF1P22415 RPL39P29-201ENST00000447779 157 ntBASIC1.47□□□□□ -2.17
USF1P22415 SNRPFP4-201ENST00000456366 242 ntBASIC1.47□□□□□ -2.17
USF1P22415 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.47□□□□□ -2.17
USF1P22415 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC1.47□□□□□ -2.17
USF1P22415 AL163540.1-201ENST00000485382 386 ntBASIC1.47□□□□□ -2.17
USF1P22415 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
USF1P22415 MTND2P33-201ENST00000506452 1031 ntBASIC1.47□□□□□ -2.17
USF1P22415 AC005178.1-201ENST00000508392 440 ntBASIC1.47□□□□□ -2.17
USF1P22415 MTND3P25-201ENST00000509243 135 ntBASIC1.47□□□□□ -2.17
USF1P22415 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.47□□□□□ -2.17
USF1P22415 SCARNA24.1-201ENST00000516465 137 ntBASIC1.47□□□□□ -2.17
USF1P22415 RNU6-965P-201ENST00000516721 96 ntBASIC1.47□□□□□ -2.17
USF1P22415 RNU2-46P-201ENST00000517038 113 ntBASIC1.47□□□□□ -2.17
USF1P22415 CBX3P4-201ENST00000538909 354 ntBASIC1.47□□□□□ -2.17
USF1P22415 AC022254.1-201ENST00000567857 235 ntBASIC1.47□□□□□ -2.17
USF1P22415 MIR3618-201ENST00000580330 88 ntBASIC1.47□□□□□ -2.17
USF1P22415 MIR4781-201ENST00000585250 76 ntBASIC1.47□□□□□ -2.17
USF1P22415 AC091135.1-201ENST00000585943 307 ntBASIC1.47□□□□□ -2.17
USF1P22415 AL121992.2-201ENST00000606262 256 ntBASIC1.47□□□□□ -2.17
USF1P22415 AC024933.1-201ENST00000608472 348 ntBASIC1.47□□□□□ -2.17
USF1P22415 AL133173.2-201ENST00000614270 90 ntBASIC1.47□□□□□ -2.17
USF1P22415 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USF1P22415 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
USF1P22415 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.46□□□□□ -2.17
USF1P22415 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
USF1P22415 RNU1-58P-201ENST00000362413 163 ntBASIC1.46□□□□□ -2.18
USF1P22415 Y_RNA.99-201ENST00000363138 105 ntBASIC1.46□□□□□ -2.18
USF1P22415 U8.10-201ENST00000384260 133 ntBASIC1.46□□□□□ -2.18
USF1P22415 Y_RNA.576-201ENST00000384781 102 ntBASIC1.46□□□□□ -2.18
USF1P22415 Y_RNA.597-201ENST00000410463 100 ntBASIC1.46□□□□□ -2.18
USF1P22415 RNU6-607P-201ENST00000411283 108 ntBASIC1.46□□□□□ -2.18
USF1P22415 AL590556.1-201ENST00000423231 483 ntBASIC1.46□□□□□ -2.18
USF1P22415 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.46□□□□□ -2.18
USF1P22415 AL591043.1-201ENST00000432461 424 ntBASIC1.46□□□□□ -2.18
USF1P22415 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC1.46□□□□□ -2.18
USF1P22415 AC000111.3-201ENST00000433478 193 ntBASIC1.46□□□□□ -2.18
USF1P22415 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC1.46□□□□□ -2.18
USF1P22415 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.46□□□□□ -2.18
USF1P22415 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.46□□□□□ -2.18
USF1P22415 PPP1R2P5-201ENST00000457256 603 ntBASIC1.46□□□□□ -2.18
USF1P22415 RPL30P6-201ENST00000475925 342 ntBASIC1.46□□□□□ -2.18
USF1P22415 RAP1BP2-201ENST00000478270 544 ntBASIC1.46□□□□□ -2.18
USF1P22415 RPS29P11-201ENST00000496507 171 ntBASIC1.46□□□□□ -2.18
USF1P22415 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC1.46□□□□□ -2.18
USF1P22415 RN7SKP265-201ENST00000516448 223 ntBASIC1.46□□□□□ -2.18
USF1P22415 Vault.3-201ENST00000516676 95 ntBASIC1.46□□□□□ -2.18
USF1P22415 RNU6-1220P-201ENST00000517126 108 ntBASIC1.46□□□□□ -2.18
USF1P22415 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.46□□□□□ -2.18
USF1P22415 AP005660.1-201ENST00000522972 293 ntBASIC1.46□□□□□ -2.18
USF1P22415 AP002453.2-201ENST00000533503 320 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms