Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC009994.1-201ENST00000606889 253 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 AC005046.1-201ENST00000608515 625 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 AL121757.2-201ENST00000611223 313 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
HOXD4P09016 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
HOXD4P09016 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXD4P09016 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HOXD4P09016 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HOXD4P09016 OR56A5-201ENST00000340110 738 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 RNU6-845P-201ENST00000362578 103 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 RNU6-1252P-201ENST00000363054 104 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 RNU6-778P-201ENST00000363269 103 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 SNORA67.1-201ENST00000364749 141 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 Y_RNA.414-201ENST00000384011 101 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 MIR144-201ENST00000384886 86 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 EIF4E2P1-201ENST00000393781 255 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 AL513475.1-201ENST00000406602 315 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 SNORA3.2-201ENST00000408221 125 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 Y_RNA.623-201ENST00000411128 95 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 PDCL2P1-201ENST00000419302 352 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 MTCO3P46-201ENST00000425787 232 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 HMGB1P9-201ENST00000429856 646 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.3□□□□□ -2.04
HOXD4P09016 AC011005.2-201ENST00000487324 359 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 RPS29P20-201ENST00000489592 171 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 SNORA19.2-201ENST00000516013 114 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 SNORA14.1-201ENST00000516113 141 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 MIR892C-201ENST00000516410 77 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 RNU6-875P-201ENST00000516488 106 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 RNU6-703P-201ENST00000516946 107 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 SNORA25.17-201ENST00000517184 124 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.3□□□□□ -2.04
HOXD4P09016 AC109329.2-201ENST00000519658 482 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXD4P09016 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXD4P09016 GLYCAM1-201ENST00000546596 285 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXD4P09016 AC027176.1-201ENST00000560204 514 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXD4P09016 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXD4P09016 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXD4P09016 MTND4LP5-201ENST00000605152 292 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HOXD4P09016 AC093913.1-201ENST00000614178 329 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 AC104260.1-201ENST00000616660 539 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 RMST_4.1-201ENST00000616886 107 ntBASIC2.3□□□□□ -2.04
HOXD4P09016 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HOXD4P09016 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HOXD4P09016 Z82209.1-201ENST00000422141 2135 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 MTND4P12-201ENST00000498999 1377 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
HOXD4P09016 SNORA68.1-201ENST00000364537 132 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 RNU1-73P-201ENST00000383971 164 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 RNU6-658P-201ENST00000384606 106 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 NDUFS5P4-201ENST00000412983 318 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 RPL26P27-201ENST00000414397 437 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 AL135786.1-201ENST00000415892 214 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 AC009963.1-201ENST00000417265 157 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXD4P09016 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXD4P09016 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXD4P09016 AL353729.1-201ENST00000425044 720 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 IFNA20P-201ENST00000436840 528 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 AL078601.1-201ENST00000444542 271 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXD4P09016 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXD4P09016 snoU13.15-201ENST00000459407 104 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 HMGB1P30-201ENST00000492455 606 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXD4P09016 MRPS36P2-201ENST00000512569 299 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 RN7SKP24-201ENST00000515888 284 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 RNU6-1069P-201ENST00000516612 133 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.29□□□□□ -2.04
HOXD4P09016 MIR4742-201ENST00000581069 85 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 MIR5092-201ENST00000583139 88 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 MIR3942-201ENST00000585264 109 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 MIR5692C1-201ENST00000585309 91 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXD4P09016 Y_RNA.804-201ENST00000615262 101 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXD4P09016 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
HOXD4P09016 U6.99-201ENST00000637524 83 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
HOXD4P09016 AP006437.1-201ENST00000641440 3685 ntBASIC2.29□□□□□ -2.04
HOXD4P09016 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HOXD4P09016 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXD4P09016 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
HOXD4P09016 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
HOXD4P09016 RNU6-254P-201ENST00000363377 107 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 SNORD113-7-201ENST00000363762 77 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 SNORD81.2-201ENST00000365153 76 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 Z98749.2-208ENST00000381646 500 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 Y_RNA.480-201ENST00000384364 102 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 MIR10A-201ENST00000385043 110 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 MTND3P8-201ENST00000412909 339 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 AC096649.2-201ENST00000416186 393 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXD4P09016 RPS15AP5-201ENST00000436276 388 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 NDUFA5P4-201ENST00000436704 385 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms