Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
VIMP08670 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.29□□□□□ -2.04
VIMP08670 U3.13-201ENST00000364804 214 ntBASIC2.29□□□□□ -2.04
VIMP08670 SNORA69-201ENST00000383895 132 ntBASIC2.29□□□□□ -2.04
VIMP08670 CALM2P3-201ENST00000400429 449 ntBASIC2.29□□□□□ -2.04
VIMP08670 CBX3P9-201ENST00000402326 552 ntBASIC2.29□□□□□ -2.04
VIMP08670 RNU6-293P-201ENST00000411259 106 ntBASIC2.29□□□□□ -2.04
VIMP08670 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.29□□□□□ -2.04
VIMP08670 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.29□□□□□ -2.04
VIMP08670 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.29□□□□□ -2.04
VIMP08670 RPS15AP28-201ENST00000435088 386 ntBASIC2.29□□□□□ -2.04
VIMP08670 AC243964.1-201ENST00000441814 261 ntBASIC2.29□□□□□ -2.04
VIMP08670 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.29□□□□□ -2.04
VIMP08670 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.29□□□□□ -2.04
VIMP08670 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.29□□□□□ -2.04
VIMP08670 SLC25A15P5-201ENST00000508033 253 ntBASIC2.29□□□□□ -2.04
VIMP08670 AC026436.1-201ENST00000510537 270 ntBASIC2.29□□□□□ -2.04
VIMP08670 RNA5SP401-201ENST00000515920 127 ntBASIC2.29□□□□□ -2.04
VIMP08670 MIR514B-201ENST00000516774 80 ntBASIC2.29□□□□□ -2.04
VIMP08670 AC069113.1-201ENST00000517763 267 ntBASIC2.29□□□□□ -2.04
VIMP08670 CYCSP26-201ENST00000534107 320 ntBASIC2.29□□□□□ -2.04
VIMP08670 AC090115.3-201ENST00000553218 849 ntBASIC2.29□□□□□ -2.04
VIMP08670 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.29□□□□□ -2.04
VIMP08670 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.29□□□□□ -2.04
VIMP08670 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.29□□□□□ -2.04
VIMP08670 AC002984.1-201ENST00000591692 448 ntBASIC2.29□□□□□ -2.04
VIMP08670 AC007621.1-201ENST00000604544 437 ntBASIC2.29□□□□□ -2.04
VIMP08670 AC093783.1-201ENST00000612976 329 ntBASIC2.29□□□□□ -2.04
VIMP08670 AL359880.1-201ENST00000621879 266 ntBASIC2.29□□□□□ -2.04
VIMP08670 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
VIMP08670 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
VIMP08670 RNU6-1085P-201ENST00000363576 107 ntBASIC2.28□□□□□ -2.04
VIMP08670 Y_RNA.481-201ENST00000384373 102 ntBASIC2.28□□□□□ -2.04
VIMP08670 MIR196B-201ENST00000384852 84 ntBASIC2.28□□□□□ -2.04
VIMP08670 MIR561-201ENST00000385216 97 ntBASIC2.28□□□□□ -2.04
VIMP08670 RNA5SP219-201ENST00000390940 113 ntBASIC2.28□□□□□ -2.04
VIMP08670 AL445529.1-201ENST00000398713 389 ntBASIC2.28□□□□□ -2.04
VIMP08670 RNU6-1245P-201ENST00000411130 106 ntBASIC2.28□□□□□ -2.04
VIMP08670 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.28□□□□□ -2.04
VIMP08670 AL117339.3-201ENST00000418733 162 ntBASIC2.28□□□□□ -2.04
VIMP08670 ARL5AP4-201ENST00000430731 512 ntBASIC2.28□□□□□ -2.04
VIMP08670 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.28□□□□□ -2.04
VIMP08670 AC013470.1-201ENST00000453438 462 ntBASIC2.28□□□□□ -2.04
VIMP08670 AL353752.1-201ENST00000454946 260 ntBASIC2.28□□□□□ -2.04
VIMP08670 SNORD109B-201ENST00000458961 67 ntBASIC2.28□□□□□ -2.04
VIMP08670 SNORD109A-201ENST00000459128 67 ntBASIC2.28□□□□□ -2.04
VIMP08670 RNU6-261P-201ENST00000459506 102 ntBASIC2.28□□□□□ -2.04
VIMP08670 MTCO3P38-201ENST00000468910 766 ntBASIC2.28□□□□□ -2.04
VIMP08670 RPL30P1-201ENST00000488676 339 ntBASIC2.28□□□□□ -2.04
VIMP08670 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2.28□□□□□ -2.04
VIMP08670 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.28□□□□□ -2.04
VIMP08670 RNA5SP320-201ENST00000516263 124 ntBASIC2.28□□□□□ -2.04
VIMP08670 RNU6-1038P-201ENST00000516516 104 ntBASIC2.28□□□□□ -2.04
VIMP08670 RNU7-193P-201ENST00000516723 65 ntBASIC2.28□□□□□ -2.04
VIMP08670 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.28□□□□□ -2.04
VIMP08670 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.28□□□□□ -2.04
VIMP08670 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.28□□□□□ -2.04
VIMP08670 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.28□□□□□ -2.04
VIMP08670 AC091135.1-201ENST00000585943 307 ntBASIC2.28□□□□□ -2.04
VIMP08670 AC107304.1-201ENST00000604229 296 ntBASIC2.28□□□□□ -2.04
VIMP08670 AL670379.2-201ENST00000604983 252 ntBASIC2.28□□□□□ -2.04
VIMP08670 MIR7106-201ENST00000612419 65 ntBASIC2.28□□□□□ -2.04
VIMP08670 AC098657.3-201ENST00000620434 263 ntBASIC2.28□□□□□ -2.04
VIMP08670 MIR1291-201ENST00000627649 87 ntBASIC2.28□□□□□ -2.04
VIMP08670 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.28□□□□□ -2.04
VIMP08670 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.28□□□□□ -2.04
VIMP08670 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.28□□□□□ -2.04
VIMP08670 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.27□□□□□ -2.05
VIMP08670 snoU2_19.1-201ENST00000362361 80 ntBASIC2.27□□□□□ -2.05
VIMP08670 RNU6-827P-201ENST00000365553 106 ntBASIC2.27□□□□□ -2.05
VIMP08670 RNU6-692P-201ENST00000384496 107 ntBASIC2.27□□□□□ -2.05
VIMP08670 Y_RNA.517-201ENST00000384551 106 ntBASIC2.27□□□□□ -2.05
VIMP08670 RNU6-1274P-201ENST00000384557 107 ntBASIC2.27□□□□□ -2.05
VIMP08670 RNU6-1222P-201ENST00000384615 107 ntBASIC2.27□□□□□ -2.05
VIMP08670 MIR491-201ENST00000384877 84 ntBASIC2.27□□□□□ -2.05
VIMP08670 AC096664.2-201ENST00000411843 406 ntBASIC2.27□□□□□ -2.05
VIMP08670 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.27□□□□□ -2.05
VIMP08670 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.27□□□□□ -2.05
VIMP08670 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.27□□□□□ -2.05
VIMP08670 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.27□□□□□ -2.05
VIMP08670 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.27□□□□□ -2.05
VIMP08670 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.27□□□□□ -2.05
VIMP08670 RNU6-717P-201ENST00000459076 104 ntBASIC2.27□□□□□ -2.05
VIMP08670 AC018868.1-201ENST00000491307 315 ntBASIC2.27□□□□□ -2.05
VIMP08670 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.27□□□□□ -2.05
VIMP08670 RNU4-29P-201ENST00000515943 174 ntBASIC2.27□□□□□ -2.05
VIMP08670 COPS8P3-201ENST00000526024 482 ntBASIC2.27□□□□□ -2.05
VIMP08670 AC118273.2-201ENST00000532092 465 ntBASIC2.27□□□□□ -2.05
VIMP08670 OR11H5P-201ENST00000554039 926 ntBASIC2.27□□□□□ -2.05
VIMP08670 VN1R80P-201ENST00000597126 338 ntBASIC2.27□□□□□ -2.05
VIMP08670 RNU6-85P-201ENST00000605989 107 ntBASIC2.27□□□□□ -2.05
VIMP08670 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
VIMP08670 KPNA2P1-201ENST00000458289 1591 ntBASIC2.27□□□□□ -2.05
VIMP08670 AL365361.1-201ENST00000566942 3481 ntBASIC2.26□□□□□ -2.05
VIMP08670 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VIMP08670 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.26□□□□□ -2.05
VIMP08670 RNA5SP138-201ENST00000365098 114 ntBASIC2.26□□□□□ -2.05
VIMP08670 SNORA25B-201ENST00000365507 128 ntBASIC2.26□□□□□ -2.05
VIMP08670 MIR17-201ENST00000385012 84 ntBASIC2.26□□□□□ -2.05
VIMP08670 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms