Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 MIR3941-201ENST00000582572 103 ntBASIC2.34□□□□□ -2.03
SIX3O95343 AL136363.2-201ENST00000604173 851 ntBASIC2.34□□□□□ -2.03
SIX3O95343 NDUFA8P1-201ENST00000605525 367 ntBASIC2.34□□□□□ -2.03
SIX3O95343 AC067747.1-201ENST00000608026 250 ntBASIC2.34□□□□□ -2.03
SIX3O95343 AL161423.1-201ENST00000613700 262 ntBASIC2.34□□□□□ -2.03
SIX3O95343 AC073534.2-201ENST00000620377 381 ntBASIC2.34□□□□□ -2.03
SIX3O95343 U4.3-201ENST00000621047 82 ntBASIC2.34□□□□□ -2.03
SIX3O95343 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.34□□□□□ -2.03
SIX3O95343 FO624990.1-201ENST00000636373 85 ntBASIC2.34□□□□□ -2.03
SIX3O95343 U4.7-201ENST00000638126 106 ntBASIC2.34□□□□□ -2.03
SIX3O95343 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.34□□□□□ -2.04
SIX3O95343 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
SIX3O95343 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
SIX3O95343 RNU1-72P-201ENST00000362976 153 ntBASIC2.33□□□□□ -2.04
SIX3O95343 RNU1-138P-201ENST00000384093 164 ntBASIC2.33□□□□□ -2.04
SIX3O95343 SNORA67.4-201ENST00000384688 142 ntBASIC2.33□□□□□ -2.04
SIX3O95343 AL359511.1-201ENST00000402970 211 ntBASIC2.33□□□□□ -2.04
SIX3O95343 BTF3P7-201ENST00000407097 488 ntBASIC2.33□□□□□ -2.04
SIX3O95343 AF274854.1-201ENST00000413236 615 ntBASIC2.33□□□□□ -2.04
SIX3O95343 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.33□□□□□ -2.04
SIX3O95343 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.33□□□□□ -2.04
SIX3O95343 MTCO2P19-201ENST00000427513 598 ntBASIC2.33□□□□□ -2.04
SIX3O95343 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.33□□□□□ -2.04
SIX3O95343 AL121601.2-201ENST00000438019 707 ntBASIC2.33□□□□□ -2.04
SIX3O95343 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.33□□□□□ -2.04
SIX3O95343 AC108729.3-201ENST00000513484 108 ntBASIC2.33□□□□□ -2.04
SIX3O95343 SNORA4.4-201ENST00000515921 135 ntBASIC2.33□□□□□ -2.04
SIX3O95343 AC023050.3-201ENST00000541142 333 ntBASIC2.33□□□□□ -2.04
SIX3O95343 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.33□□□□□ -2.04
SIX3O95343 MIR4781-201ENST00000585250 76 ntBASIC2.33□□□□□ -2.04
SIX3O95343 MIR6863-201ENST00000636112 90 ntBASIC2.33□□□□□ -2.04
SIX3O95343 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.33□□□□□ -2.04
SIX3O95343 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
SIX3O95343 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.32□□□□□ -2.04
SIX3O95343 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.32□□□□□ -2.04
SIX3O95343 RNA5SP68-201ENST00000363885 119 ntBASIC2.32□□□□□ -2.04
SIX3O95343 SNORA3A-201ENST00000364113 130 ntBASIC2.32□□□□□ -2.04
SIX3O95343 RNU6-266P-201ENST00000364225 107 ntBASIC2.32□□□□□ -2.04
SIX3O95343 MIR518E-201ENST00000385252 88 ntBASIC2.32□□□□□ -2.04
SIX3O95343 RNU6-293P-201ENST00000411259 106 ntBASIC2.32□□□□□ -2.04
SIX3O95343 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
SIX3O95343 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.32□□□□□ -2.04
SIX3O95343 AL606489.2-201ENST00000433886 234 ntBASIC2.32□□□□□ -2.04
SIX3O95343 RPL7P54-201ENST00000438336 674 ntBASIC2.32□□□□□ -2.04
SIX3O95343 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
SIX3O95343 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
SIX3O95343 RPS3P1-201ENST00000456781 192 ntBASIC2.32□□□□□ -2.04
SIX3O95343 SRRM1P2-201ENST00000464531 1192 ntBASIC2.32□□□□□ -2.04
SIX3O95343 AL121594.1-201ENST00000475906 575 ntBASIC2.32□□□□□ -2.04
SIX3O95343 AK3P2-201ENST00000507976 429 ntBASIC2.32□□□□□ -2.04
SIX3O95343 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.32□□□□□ -2.04
SIX3O95343 AC026436.1-201ENST00000510537 270 ntBASIC2.32□□□□□ -2.04
SIX3O95343 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.32□□□□□ -2.04
SIX3O95343 RNA5SP148-201ENST00000516527 94 ntBASIC2.32□□□□□ -2.04
SIX3O95343 SNORA48.11-201ENST00000517015 89 ntBASIC2.32□□□□□ -2.04
SIX3O95343 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.32□□□□□ -2.04
SIX3O95343 AP005435.4-201ENST00000529514 284 ntBASIC2.32□□□□□ -2.04
SIX3O95343 MIR6817-201ENST00000615588 66 ntBASIC2.32□□□□□ -2.04
SIX3O95343 AP003400.5-201ENST00000624827 617 ntBASIC2.32□□□□□ -2.04
SIX3O95343 OR5AK4P-201ENST00000635912 903 ntBASIC2.32□□□□□ -2.04
SIX3O95343 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.32□□□□□ -2.04
SIX3O95343 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.32□□□□□ -2.04
SIX3O95343 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.32□□□□□ -2.04
SIX3O95343 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
SIX3O95343 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.31□□□□□ -2.04
SIX3O95343 snoU2_19.1-201ENST00000362361 80 ntBASIC2.31□□□□□ -2.04
SIX3O95343 Y_RNA.255-201ENST00000364581 97 ntBASIC2.31□□□□□ -2.04
SIX3O95343 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
SIX3O95343 Y_RNA.409-201ENST00000383990 98 ntBASIC2.31□□□□□ -2.04
SIX3O95343 RNU6-259P-201ENST00000383999 107 ntBASIC2.31□□□□□ -2.04
SIX3O95343 Y_RNA.559-201ENST00000384686 107 ntBASIC2.31□□□□□ -2.04
SIX3O95343 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.31□□□□□ -2.04
SIX3O95343 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.31□□□□□ -2.04
SIX3O95343 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.31□□□□□ -2.04
SIX3O95343 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.31□□□□□ -2.04
SIX3O95343 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.31□□□□□ -2.04
SIX3O95343 AC073415.1-201ENST00000449240 153 ntBASIC2.31□□□□□ -2.04
SIX3O95343 AC011753.1-201ENST00000451001 220 ntBASIC2.31□□□□□ -2.04
SIX3O95343 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.31□□□□□ -2.04
SIX3O95343 RNU7-167P-201ENST00000459160 62 ntBASIC2.31□□□□□ -2.04
SIX3O95343 RPL21P99-201ENST00000480369 423 ntBASIC2.31□□□□□ -2.04
SIX3O95343 RNA5SP401-201ENST00000515920 127 ntBASIC2.31□□□□□ -2.04
SIX3O95343 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.31□□□□□ -2.04
SIX3O95343 CYCSP26-201ENST00000534107 320 ntBASIC2.31□□□□□ -2.04
SIX3O95343 IMMP1LP2-201ENST00000552954 492 ntBASIC2.31□□□□□ -2.04
SIX3O95343 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.31□□□□□ -2.04
SIX3O95343 AGGF1P4-201ENST00000568249 801 ntBASIC2.31□□□□□ -2.04
SIX3O95343 RPS3AP23-202ENST00000574601 686 ntBASIC2.31□□□□□ -2.04
SIX3O95343 AC091135.1-201ENST00000585943 307 ntBASIC2.31□□□□□ -2.04
SIX3O95343 AC025165.5-201ENST00000602802 578 ntBASIC2.31□□□□□ -2.04
SIX3O95343 AC007621.1-201ENST00000604544 437 ntBASIC2.31□□□□□ -2.04
SIX3O95343 AC104073.3-201ENST00000610942 955 ntBASIC2.31□□□□□ -2.04
SIX3O95343 Z99129.1-201ENST00000612510 255 ntBASIC2.31□□□□□ -2.04
SIX3O95343 AC048344.4-201ENST00000619744 527 ntBASIC2.31□□□□□ -2.04
SIX3O95343 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.31□□□□□ -2.04
SIX3O95343 MIR1291-201ENST00000627649 87 ntBASIC2.31□□□□□ -2.04
SIX3O95343 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.31□□□□□ -2.04
SIX3O95343 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.3□□□□□ -2.04
SIX3O95343 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SIX3O95343 Y_RNA.122-201ENST00000363331 96 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms