Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 Y_RNA.554-201ENST00000384672 102 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 RNU6-9-201ENST00000384776 107 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 RNU6-33P-201ENST00000384793 107 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 MTCO3P40-201ENST00000392516 676 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 RNU2-20P-201ENST00000410425 191 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 FABP5P14-201ENST00000437273 393 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AL445687.1-201ENST00000439946 251 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC016691.1-201ENST00000441321 413 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AL356010.1-201ENST00000456364 102 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 HMGN2P23-201ENST00000456759 269 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 RNU7-63P-201ENST00000459054 62 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 RNU6-261P-201ENST00000459506 102 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 GMFBP1-201ENST00000467831 427 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AP001025.1-201ENST00000486139 332 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC009646.1-201ENST00000510455 318 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 HMGB3P3-201ENST00000510526 400 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 RNA5SP401-201ENST00000515920 127 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 VTRNA2-2P-201ENST00000516091 103 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 SNORA40.12-201ENST00000516329 111 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 MIR892C-201ENST00000516410 77 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 RPPH1-2P-201ENST00000516688 293 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC104383.1-201ENST00000530297 370 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC245505.1-201ENST00000556398 224 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 MIR4658-201ENST00000584344 65 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 MIR4448-201ENST00000584360 86 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AL136363.2-201ENST00000604173 851 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 APOOP1-201ENST00000604695 592 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC087045.1-201ENST00000605856 382 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 RNU6-6P-201ENST00000606623 107 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC017083.3-201ENST00000609955 700 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 MIR6840-201ENST00000611937 71 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AL353997.5-201ENST00000618886 171 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 YWHAEP7-203ENST00000622054 312 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AL031601.2-202ENST00000622650 282 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 ZNF519P1-201ENST00000449011 1626 ntBASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.57□□□□□ -2.16
TRAV40A0A0B4J280 RBBP8P1-201ENST00000449447 1844 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 ZNF355P-201ENST00000427301 3216 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AL596028.1-201ENST00000326971 197 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 RNU6-1032P-201ENST00000384100 107 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 Y_RNA.516-201ENST00000384541 124 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 MIR147B-201ENST00000390185 80 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 SNORA40.18-201ENST00000391200 128 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 SNORA26.9-201ENST00000391322 122 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 RNU6-1068P-201ENST00000410958 103 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 MTCO1P21-201ENST00000416634 589 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC003989.2-201ENST00000440224 169 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 NDUFB1P2-201ENST00000449477 176 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC011753.1-201ENST00000451001 220 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 Y_RNA.638-201ENST00000459374 113 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 DYNLL1P5-201ENST00000467158 270 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AL163973.1-201ENST00000484753 577 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC107401.1-201ENST00000503426 685 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC019235.1-201ENST00000503847 207 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 SNORA43.2-201ENST00000516652 128 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 RNU6-835P-201ENST00000516974 104 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 SNORD19.2-201ENST00000516978 73 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 SNORA25.17-201ENST00000517184 124 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 SNORA31.23-201ENST00000517219 133 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 SCARNA11.3-201ENST00000517276 130 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 CBX3P7-201ENST00000532876 502 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC016957.1-201ENST00000534895 309 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 MIR5089-201ENST00000580047 84 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 MIR4424-201ENST00000585257 86 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AC012507.3-201ENST00000603556 477 ntBASIC1.56□□□□□ -2.16
TRAV40A0A0B4J280 AL021997.1-201ENST00000605757 193 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms