Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SIX2Q9NPC8 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.53□□□□□ -2
SIX2Q9NPC8 AC110491.1-201ENST00000562191 2010 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 RNU6-797P-201ENST00000363101 109 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.53□□□□□ -2
SIX2Q9NPC8 Y_RNA.529-201ENST00000384586 119 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 MT-TD-201ENST00000387419 68 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.53□□□□□ -2
SIX2Q9NPC8 AL096701.2-201ENST00000416920 238 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC016831.2-201ENST00000417179 352 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 RPL32P28-201ENST00000443577 397 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.53□□□□□ -2
SIX2Q9NPC8 AC104472.2-201ENST00000469035 601 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC128713.1-201ENST00000471495 306 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 MTCO1P29-201ENST00000496868 288 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 MTND4LP22-201ENST00000508209 276 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC008526.1-201ENST00000509149 338 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 MTND3P22-201ENST00000510932 243 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.53□□□□□ -2
SIX2Q9NPC8 RNU6-1332P-201ENST00000516666 104 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 RNA5SP454-201ENST00000517231 127 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 COPS8P3-201ENST00000526024 482 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 LINC00933-203ENST00000559812 219 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC010653.1-201ENST00000571108 881 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 RPS3AP23-202ENST00000574601 686 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC243960.4-201ENST00000600532 288 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 C8orf59P2-201ENST00000603441 271 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC087045.1-201ENST00000605856 382 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.53□□□□□ -2
SIX2Q9NPC8 AC104237.2-201ENST00000612456 443 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 uc_338.15-201ENST00000615470 191 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC009233.1-201ENST00000616477 371 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 AC112487.2-201ENST00000637950 304 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 ZNF519P1-201ENST00000449011 1626 ntBASIC2.53□□□□□ -2
SIX2Q9NPC8 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.53□□□□□ -2.01
SIX2Q9NPC8 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-37P-201ENST00000362692 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-11P-201ENST00000364234 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 Y_RNA.356-201ENST00000365475 113 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-898P-201ENST00000365627 104 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-25P-201ENST00000383873 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 SNORD116-11-201ENST00000383882 92 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-1-201ENST00000383898 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU1-138P-201ENST00000384093 164 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-48P-201ENST00000384161 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-36P-201ENST00000384172 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-4P-201ENST00000384205 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-5P-201ENST00000384238 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-72P-201ENST00000384285 79 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-3P-201ENST00000384314 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-16P-201ENST00000384385 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-15P-201ENST00000384534 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-2-201ENST00000384627 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-29P-201ENST00000384637 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-9-201ENST00000384776 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-33P-201ENST00000384793 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 NDUFB4P4-201ENST00000404822 243 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RAP1BP3-201ENST00000407180 549 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 NCOR1P3-201ENST00000420479 303 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RPL7P37-201ENST00000425095 738 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 TOMM20P4-201ENST00000427861 435 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 CR769767.1-201ENST00000436337 346 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU7-23P-201ENST00000459465 62 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 HMGN2P13-201ENST00000476476 274 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AL049873.1-201ENST00000480540 376 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AC234781.5-201ENST00000508429 271 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 Y_RNA.682-201ENST00000516457 100 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 Y_RNA.687-201ENST00000516558 91 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-566P-201ENST00000516790 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AP005639.2-201ENST00000527592 928 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 NACAP3-201ENST00000552100 481 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AC100830.2-201ENST00000581636 240 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 OR1M4P-201ENST00000589199 287 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 RNU6-6P-201ENST00000606623 107 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 MIR6134-201ENST00000617606 109 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AL359697.1-201ENST00000624879 587 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AC243829.7-201ENST00000633081 225 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SIX2Q9NPC8 AC233263.6-201ENST00000631132 1963 ntBASIC2.52□□□□□ -2.01
SIX2Q9NPC8 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.51□□□□□ -2.01
SIX2Q9NPC8 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
SIX2Q9NPC8 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.51□□□□□ -2.01
SIX2Q9NPC8 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.51□□□□□ -2.01
SIX2Q9NPC8 CDC27P3-201ENST00000635418 1910 ntBASIC2.51□□□□□ -2.01
SIX2Q9NPC8 RNU6-562P-201ENST00000362731 107 ntBASIC2.51□□□□□ -2.01
SIX2Q9NPC8 Y_RNA.339-201ENST00000365325 102 ntBASIC2.51□□□□□ -2.01
SIX2Q9NPC8 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms