Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RPL32P28-201ENST00000443577 397 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 ART2BP-201ENST00000453501 499 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 SNORD53B-201ENST00000577887 78 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 MIR5094-201ENST00000578766 85 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 AC008521.1-201ENST00000587471 187 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 BNIP3P33-201ENST00000598912 569 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 AC123912.5-201ENST00000605470 343 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 AC104010.1-201ENST00000616889 150 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 AC245060.5-201ENST00000610778 3293 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 Y_RNA.18-201ENST00000362461 102 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 RNU4-15P-201ENST00000362613 141 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 RNU6-533P-201ENST00000384144 107 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 RNU6-1200P-201ENST00000384162 107 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 RNU6-253P-201ENST00000384730 105 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 SNORA67.6-201ENST00000391093 99 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 MTCYBP36-201ENST00000404146 440 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 TOMM20P4-201ENST00000427861 435 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 RPS26P55-201ENST00000471178 356 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 AC112204.1-201ENST00000502591 103 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 AC010587.1-201ENST00000505809 469 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 AC112206.4-201ENST00000515142 405 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 RNA5SP445-201ENST00000515889 115 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 RNU6-902P-201ENST00000517212 91 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 TRAV32-201ENST00000553993 340 ntBASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
VCX3AQ9NNX9 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 MIR340-201ENST00000362125 95 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 RNU6-414P-201ENST00000363705 104 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 SNORD115.1-201ENST00000391109 76 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 RSL24D1P4-201ENST00000400938 484 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 MIR1323-201ENST00000408090 73 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 MIR1285-1-201ENST00000408593 84 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 MIR1267-201ENST00000408723 78 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 RNA5SP111-201ENST00000411386 101 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 Z98742.3-201ENST00000418637 326 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AC000111.3-201ENST00000433478 193 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AC132942.1-201ENST00000486753 483 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 WDR78-207ENST00000488333 613 ntTSL 3 BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AC097473.1-201ENST00000508142 408 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 MTND3P25-201ENST00000509243 135 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AC008549.1-201ENST00000512900 643 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AC018889.1-201ENST00000605372 397 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 AC105129.3-201ENST00000605455 485 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 MIR8081-201ENST00000611533 95 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.22□□□□□ -2.21
VCX3AQ9NNX9 MIR302D-201ENST00000362275 68 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 RNU6-1285P-201ENST00000363480 105 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 RNU5E-7P-201ENST00000365290 117 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 RNU6-1222P-201ENST00000384615 107 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 RNU6-939P-201ENST00000384634 107 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 C1DP2-201ENST00000418167 426 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 RPL21P111-201ENST00000418453 477 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 MTND4P20-201ENST00000424125 869 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AL591043.1-201ENST00000432461 424 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AC119618.1-201ENST00000434191 222 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AL135790.2-201ENST00000437701 267 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 CR769776.1-201ENST00000441254 787 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 FTH1P25-201ENST00000447665 469 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AC245517.4-201ENST00000448601 281 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AL009048.1-201ENST00000450437 298 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 RNU1-131P-201ENST00000458943 161 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AL049829.1-201ENST00000465411 156 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AC145146.1-201ENST00000496370 254 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AC104806.1-201ENST00000508720 308 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AC108043.1-201ENST00000512696 574 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 RRN3P3-201ENST00000549207 578 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AC073539.2-201ENST00000597113 165 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AL031281.1-201ENST00000604049 488 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 RMST_4.1-201ENST00000616886 107 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 MIR8063-201ENST00000621930 81 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AL359740.1-201ENST00000624340 592 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AC006927.4-201ENST00000639187 543 ntBASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
VCX3AQ9NNX9 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms