Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RNU5E-10P-201ENST00000363506 118 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 RNU6-1164P-201ENST00000364428 107 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
USP42Q9H9J4 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 RNU4-22P-201ENST00000411058 166 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC009310.1-201ENST00000414414 451 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AL022400.1-201ENST00000423946 935 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 AL358794.1-201ENST00000445689 381 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AL606517.1-201ENST00000446914 387 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 ZNF736P4Y-201ENST00000454995 1243 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AL583843.1-201ENST00000456070 346 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 HMGB1P30-201ENST00000492455 606 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC109329.1-201ENST00000518744 317 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC022616.8-201ENST00000533569 253 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 MIR1273C-201ENST00000578669 77 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 AL355472.4-201ENST00000610233 626 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AL132822.1-201ENST00000617063 513 ntBASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.37□□□□□ -2.19
USP42Q9H9J4 RNU6-944P-201ENST00000364023 107 ntBASIC1.36□□□□□ -2.19
USP42Q9H9J4 RNU6-843P-201ENST00000384454 104 ntBASIC1.36□□□□□ -2.19
USP42Q9H9J4 AL591704.1-201ENST00000432574 275 ntBASIC1.36□□□□□ -2.19
USP42Q9H9J4 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.36□□□□□ -2.19
USP42Q9H9J4 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC1.36□□□□□ -2.19
USP42Q9H9J4 HSPE1P24-201ENST00000450782 238 ntBASIC1.36□□□□□ -2.19
USP42Q9H9J4 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.36□□□□□ -2.19
USP42Q9H9J4 MIR5000-201ENST00000577717 103 ntBASIC1.36□□□□□ -2.19
USP42Q9H9J4 VN1R82P-201ENST00000601481 356 ntBASIC1.36□□□□□ -2.19
USP42Q9H9J4 AC072039.2-201ENST00000608883 439 ntBASIC1.36□□□□□ -2.19
USP42Q9H9J4 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.36□□□□□ -2.19
USP42Q9H9J4 AC092140.2-201ENST00000618027 521 ntBASIC1.36□□□□□ -2.19
USP42Q9H9J4 FRG1KP-201ENST00000623592 341 ntBASIC1.36□□□□□ -2.19
USP42Q9H9J4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
USP42Q9H9J4 snoU2_19.1-201ENST00000362361 80 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 Y_RNA.36-201ENST00000362602 112 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 RNY3P13-201ENST00000365542 102 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 Y_RNA.534-201ENST00000384599 112 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 RPS3AP37-201ENST00000419176 745 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC1.35□□□□□ -2.19
USP42Q9H9J4 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC1.35□□□□□ -2.19
USP42Q9H9J4 RN7SKP179-201ENST00000516126 217 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 AC013828.2-201ENST00000532487 235 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.35□□□□□ -2.19
USP42Q9H9J4 MIR544B-201ENST00000582372 78 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 AC069431.2-201ENST00000604149 1099 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 BCRP9-201ENST00000605312 388 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 AC211469.2-201ENST00000605461 205 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.35□□□□□ -2.19
USP42Q9H9J4 AL365204.3-201ENST00000612448 685 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.35□□□□□ -2.19
USP42Q9H9J4 AC063943.3-201ENST00000615562 356 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 AC093648.1-201ENST00000623546 606 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 AC004808.1-201ENST00000627671 721 ntBASIC1.35□□□□□ -2.19
USP42Q9H9J4 AL161722.3-201ENST00000605789 2983 ntBASIC1.34□□□□□ -2.19
USP42Q9H9J4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
USP42Q9H9J4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
USP42Q9H9J4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.34□□□□□ -2.2
USP42Q9H9J4 Y_RNA.67-201ENST00000362870 100 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 RNU6-433P-201ENST00000363216 104 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 SMIM11P1-201ENST00000369586 178 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.34□□□□□ -2.2
USP42Q9H9J4 RNU6-338P-201ENST00000383888 105 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 RNU6-439P-201ENST00000384188 106 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.34□□□□□ -2.2
USP42Q9H9J4 PIGPP2-201ENST00000411569 458 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.34□□□□□ -2.2
USP42Q9H9J4 MTATP6P20-201ENST00000414147 562 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 AC092809.3-201ENST00000415453 231 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 EEF1A1P39-201ENST00000440791 250 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 SNORD97-201ENST00000459187 142 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 AC005908.1-201ENST00000468701 347 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 RPL30P12-201ENST00000474666 353 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.34□□□□□ -2.2
USP42Q9H9J4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.34□□□□□ -2.2
USP42Q9H9J4 BNIP3P31-201ENST00000604515 566 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 AC080013.3-201ENST00000606839 578 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 MIR15A-201ENST00000607334 83 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 AC091965.4-201ENST00000607691 587 ntBASIC1.34□□□□□ -2.2
USP42Q9H9J4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.34□□□□□ -2.2
USP42Q9H9J4 RNU6-395P-201ENST00000365662 106 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 RNU6-723P-201ENST00000383973 107 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 SNORD116-20-201ENST00000384529 92 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 RNU6-1242P-201ENST00000391052 103 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 RNU1-139P-201ENST00000391307 165 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 MIR1285-1-201ENST00000408593 84 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 RNU2-36P-201ENST00000410361 191 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 NCOR1P3-201ENST00000420479 303 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 AL365338.1-201ENST00000422282 858 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 LARP1BP3-201ENST00000437229 869 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 AC118469.1-201ENST00000442943 488 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 AC003071.1-201ENST00000451219 789 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms