Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL512310.1-201ENST00000548639 172 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 IMMP1LP2-201ENST00000552954 492 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 MIR4299-201ENST00000577899 72 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 MIR4435-1-201ENST00000582552 80 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 AC243960.4-201ENST00000600532 288 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 BNIP3P30-201ENST00000601184 574 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 AC021646.1-201ENST00000605469 484 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 AC103591.3-201ENST00000608684 209 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 uc_338.15-201ENST00000615470 191 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 MIR6873-201ENST00000622788 63 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 U6.114-201ENST00000636407 96 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 CENPCP1-201ENST00000533085 2578 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 ZNF680P1-201ENST00000436625 1469 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 HAUS6P2-201ENST00000433254 2404 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 MIR412-201ENST00000362142 91 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 RNA5SP160-201ENST00000364866 120 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 RNU6-487P-201ENST00000365430 104 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 XGY1-201ENST00000381172 446 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 RNU6-606P-201ENST00000384721 111 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 MIR186-201ENST00000384988 86 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 AL135786.1-201ENST00000415892 214 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 HMGN2P38-201ENST00000423806 265 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 DLGAP5P1-201ENST00000430307 464 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.1□□□□□ -2.07
VPS39Q96JC1 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS39Q96JC1 CALM1P1-201ENST00000442082 433 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.1□□□□□ -2.07
VPS39Q96JC1 RNU6-1178P-201ENST00000516674 107 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS39Q96JC1 AC026464.5-201ENST00000562497 722 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 MIR5583-1-201ENST00000580941 59 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 AC073648.5-201ENST00000603502 305 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 AC245008.1-201ENST00000608123 476 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 AC109347.2-201ENST00000610220 349 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 AC093783.1-201ENST00000612976 329 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.1□□□□□ -2.07
VPS39Q96JC1 AP000553.5-201ENST00000641933 54 ntBASIC2.1□□□□□ -2.07
VPS39Q96JC1 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
VPS39Q96JC1 MTND4P1-201ENST00000457501 1466 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 OR4G2P-201ENST00000328113 903 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
VPS39Q96JC1 RNU6-942P-201ENST00000363002 107 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 RNU6-715P-201ENST00000365204 103 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 Y_RNA.409-201ENST00000383990 98 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
VPS39Q96JC1 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS39Q96JC1 CYCSP33-201ENST00000414485 327 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.09□□□□□ -2.07
VPS39Q96JC1 UBE2V1P10-201ENST00000414685 269 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AL158823.1-201ENST00000418441 478 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.09□□□□□ -2.07
VPS39Q96JC1 MTCYBP8-201ENST00000422855 651 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 HMGN2P19-201ENST00000425149 265 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 MTCO2P19-201ENST00000427513 598 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 SRIP2-201ENST00000428470 166 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AL669831.1-202ENST00000428504 417 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AL356320.1-201ENST00000429616 163 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AL627311.1-201ENST00000431514 115 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS39Q96JC1 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
VPS39Q96JC1 GTF2IP13-201ENST00000438487 386 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 RPL23AP6-201ENST00000446637 472 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AL122001.1-201ENST00000457027 370 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 RNU7-182P-201ENST00000459009 62 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 HMGB1P30-201ENST00000492455 606 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.09□□□□□ -2.07
VPS39Q96JC1 RN7SKP298-201ENST00000515950 94 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 Y_RNA.687-201ENST00000516558 91 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AP004607.1-201ENST00000524456 203 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 CR383656.8-201ENST00000549046 145 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AC093249.1-201ENST00000567049 203 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 MTATP6P3-201ENST00000581686 676 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AC002984.1-201ENST00000591692 448 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AC009314.1-201ENST00000603871 304 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 Z99129.1-201ENST00000612510 255 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 AC005296.1-201ENST00000616145 209 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 U6.42-201ENST00000618440 107 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 SEPT14P19-203ENST00000633205 211 ntBASIC2.09□□□□□ -2.07
VPS39Q96JC1 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
VPS39Q96JC1 RNU4-48P-201ENST00000365559 182 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 RNU6-72P-201ENST00000384285 79 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
VPS39Q96JC1 RNU2-3P-201ENST00000410144 191 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 RNA5SP338-201ENST00000410495 85 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 RNU2-40P-201ENST00000410833 196 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 RNA5SP508-201ENST00000411327 119 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS39Q96JC1 MTATP6P18-201ENST00000417994 673 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.08□□□□□ -2.08
VPS39Q96JC1 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.08□□□□□ -2.08
VPS39Q96JC1 RPL23AP42-201ENST00000471152 471 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 RPS3AP17-201ENST00000472594 777 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 RNA5SP503-201ENST00000517047 117 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 RNU6-667P-201ENST00000517186 102 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms