| PGAP3 | Q96FM1 | MIR524-201 | ENST00000385242 | 87 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | MTCO3P40-201 | ENST00000392516 | 676 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | SNORD56-201 | ENST00000413522 | 71 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AL355674.1-201 | ENST00000423681 | 648 nt | TSL 1 (best) BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | TIMM9P3-201 | ENST00000428659 | 274 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | VN1R108P-201 | ENST00000431580 | 830 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | RPL7P54-201 | ENST00000438336 | 674 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AL118523.1-201 | ENST00000444436 | 480 nt | TSL 3 BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AL592309.2-201 | ENST00000444647 | 607 nt | TSL 5 BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AL122001.1-201 | ENST00000457027 | 370 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | RPL30P12-201 | ENST00000474666 | 353 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AL121594.1-201 | ENST00000475906 | 575 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | PLS1-AS1-201 | ENST00000485338 | 346 nt | TSL 3 BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC099520.1-202 | ENST00000503650 | 777 nt | TSL 3 BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC234781.5-201 | ENST00000508429 | 271 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | RNU6-586P-201 | ENST00000517265 | 104 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC145141.2-201 | ENST00000518473 | 501 nt | TSL 3 BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC139497.1-201 | ENST00000524042 | 501 nt | TSL 5 BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC104383.1-201 | ENST00000530297 | 370 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AL139193.1-201 | ENST00000554967 | 539 nt | TSL 4 BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC027807.1-201 | ENST00000559921 | 996 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AL356575.1-201 | ENST00000603008 | 283 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC103591.3-201 | ENST00000608684 | 209 nt | BASIC | 2.48 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | CYSLTR1-203 | ENST00000614798 | 2681 nt | APPRIS P1 TSL 1 (best) BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | CASC1-205 | ENST00000545133 | 2146 nt | APPRIS ALT2 TSL 2 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | WWP1-201 | ENST00000265428 | 3362 nt | APPRIS P1 TSL 1 (best) BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | MIR21-201 | ENST00000362134 | 72 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | RNU4-82P-201 | ENST00000362443 | 140 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | SNORA67.1-201 | ENST00000364749 | 141 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | Y_RNA.381-201 | ENST00000365666 | 102 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | MAPK8-202 | ENST00000374174 | 739 nt | TSL 3 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AL589987.2-201 | ENST00000417426 | 582 nt | TSL 2 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC006333.1-201 | ENST00000422401 | 410 nt | TSL 3 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | PLCE1-AS2-203 | ENST00000433038 | 396 nt | TSL 2 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | DNAJC19P4-201 | ENST00000440115 | 345 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC007969.2-201 | ENST00000441891 | 191 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC009238.1-201 | ENST00000442165 | 424 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC009237.6-201 | ENST00000446969 | 424 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | RPL39P29-201 | ENST00000447779 | 157 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | PSPHP1-201 | ENST00000450062 | 261 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | FDX1P2-201 | ENST00000450769 | 375 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC005062.1-201 | ENST00000457921 | 566 nt | TSL 3 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC012312.1-201 | ENST00000503710 | 527 nt | TSL 2 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC093831.1-201 | ENST00000509166 | 434 nt | TSL 3 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | LNX1-AS1-202 | ENST00000510785 | 550 nt | TSL 2 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | RNA5SP24-201 | ENST00000516478 | 95 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC069133.1-201 | ENST00000522857 | 566 nt | TSL 4 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | DEUP1-203 | ENST00000527307 | 767 nt | TSL 3 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | CYCSP27-201 | ENST00000527643 | 293 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC007598.1-202 | ENST00000561528 | 435 nt | TSL 3 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | AC093249.1-201 | ENST00000567049 | 203 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | MIR5007-201 | ENST00000583098 | 95 nt | BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | OR2L2-203 | ENST00000642011 | 4225 nt | APPRIS P1 BASIC | 2.47 | □□□□□ -2.01 | | |
| PGAP3 | Q96FM1 | KTN1-203 | ENST00000395309 | 4021 nt | APPRIS ALT2 TSL 5 BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | CBX3P9-201 | ENST00000402326 | 552 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AL139413.1-201 | ENST00000421309 | 217 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | Z82209.1-201 | ENST00000422141 | 2135 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | RPL9P6-201 | ENST00000492764 | 598 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | RN7SL636P-201 | ENST00000497504 | 294 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AC074124.1-201 | ENST00000502368 | 375 nt | TSL 3 BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | NAF1-205 | ENST00000509434 | 385 nt | TSL 3 BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | COPS8P3-201 | ENST00000526024 | 482 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AL512310.1-201 | ENST00000548639 | 172 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | IMMP1LP2-201 | ENST00000552954 | 492 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | DISC1FP1-204 | ENST00000563681 | 466 nt | TSL 3 BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AL138976.2-201 | ENST00000563989 | 694 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | MIR5583-1-201 | ENST00000580941 | 59 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AC091135.1-201 | ENST00000585943 | 307 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AC012594.1-269 | ENST00000600489 | 628 nt | TSL 5 BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | APOOP1-201 | ENST00000604695 | 592 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | ATG5-207 | ENST00000613993 | 733 nt | TSL 1 (best) BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AL359880.1-201 | ENST00000621879 | 266 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | COMMD6-213 | ENST00000626103 | 120 nt | TSL 5 BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | LINC01002-202 | ENST00000631412 | 459 nt | TSL 5 BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AP3S1-209 | ENST00000640413 | 489 nt | TSL 5 BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | DDIAS-201 | ENST00000329143 | 3367 nt | APPRIS P2 TSL 1 (best) BASIC | 2.46 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | CEP57L1-216 | ENST00000521522 | 2259 nt | TSL 5 BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | ZNF271P-202 | ENST00000465539 | 1970 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | LCORL-202 | ENST00000382224 | 4984 nt | APPRIS ALT2 TSL 5 BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | SNORD114-30-201 | ENST00000364448 | 72 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | RNA5SP126-201 | ENST00000365092 | 109 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | Y_RNA.409-201 | ENST00000383990 | 98 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | RNU6-301P-201 | ENST00000384277 | 107 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | RNU6-1222P-201 | ENST00000384615 | 107 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | MIR544A-201 | ENST00000384855 | 91 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | CTNNA2-204 | ENST00000409266 | 432 nt | TSL 3 BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AL353680.1-201 | ENST00000433788 | 337 nt | TSL 3 BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | MTND1P1-201 | ENST00000445453 | 368 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | RPL37P25-201 | ENST00000507308 | 276 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AC010486.1-201 | ENST00000511793 | 424 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | RNA5SP401-201 | ENST00000515920 | 127 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | RNU6ATAC9P-201 | ENST00000516210 | 116 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AC115990.1-201 | ENST00000526957 | 301 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AC021269.2-201 | ENST00000532318 | 330 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AC007495.2-202 | ENST00000564102 | 535 nt | TSL 4 BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | MIR4424-201 | ENST00000585257 | 86 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | VN1R107P-201 | ENST00000601784 | 209 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AC123912.5-201 | ENST00000605470 | 343 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | SNORD14A-201 | ENST00000606526 | 91 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| PGAP3 | Q96FM1 | AC046143.2-201 | ENST00000609789 | 160 nt | BASIC | 2.45 | □□□□□ -2.02 | | |