Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AL109918.3-201ENST00000603072 338 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AC005296.1-201ENST00000616145 209 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AC097372.5-201ENST00000623665 376 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 RNU6-487P-201ENST00000365430 104 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 RNU6-1103P-201ENST00000384150 107 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 RNU1-57P-201ENST00000384491 166 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 RNU6-1158P-201ENST00000391167 107 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 RNU6-903P-201ENST00000391270 109 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AL512604.1-201ENST00000404812 257 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 SUMO2P12-201ENST00000405924 140 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 MTATP6P18-201ENST00000417994 673 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 RPL31P63-201ENST00000422565 375 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 MTCYBP8-201ENST00000422855 651 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 USP9YP14-201ENST00000430663 563 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AL451074.3-201ENST00000437709 472 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AL353752.1-201ENST00000454946 260 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AC087884.1-201ENST00000469738 328 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 RN7SL274P-201ENST00000492268 272 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 CCDC34P1-201ENST00000507441 517 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 MTCO3P23-201ENST00000561363 289 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AC109347.2-201ENST00000610220 349 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AC104073.3-201ENST00000610942 955 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 SEPT14P19-203ENST00000633205 211 ntBASIC1.73□□□□□ -2.13
CCDC54Q8NEL0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 OR4G2P-201ENST00000328113 903 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-37P-201ENST00000362692 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 SNORD56.1-201ENST00000362913 68 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-11P-201ENST00000364234 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 Y_RNA.324-201ENST00000365165 102 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-25P-201ENST00000383873 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-1-201ENST00000383898 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 SNORD116-9-201ENST00000384000 95 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-48P-201ENST00000384161 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-36P-201ENST00000384172 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-4P-201ENST00000384205 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-5P-201ENST00000384238 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 SNORD116-3-201ENST00000384287 95 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-3P-201ENST00000384314 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-16P-201ENST00000384385 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 SNORD116-7-201ENST00000384404 95 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 SNORD116-5-201ENST00000384462 95 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-15P-201ENST00000384534 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-2-201ENST00000384627 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-29P-201ENST00000384637 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-9-201ENST00000384776 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-33P-201ENST00000384793 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AL121594.1-201ENST00000475906 575 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RPL22P13-201ENST00000493291 347 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC074344.1-201ENST00000512823 224 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC104136.1-201ENST00000512969 394 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 HSPE1P18-201ENST00000517602 280 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AP000873.5-201ENST00000533906 236 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AL512310.1-201ENST00000548639 172 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 MTND1P15-201ENST00000579262 949 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RPL30P11-203ENST00000598995 310 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC008945.2-201ENST00000606056 604 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RNU6-6P-201ENST00000606623 107 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 RN7SKP299-201ENST00000606679 301 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 AC026585.1-201ENST00000619582 524 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 SCARNA4-202ENST00000625402 129 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 U6.114-201ENST00000636407 96 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 MIR3529-201ENST00000637713 78 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 U4.7-201ENST00000638126 106 ntBASIC1.72□□□□□ -2.13
CCDC54Q8NEL0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.13
CCDC54Q8NEL0 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms