Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNA5SP76-201ENST00000516277 87 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 RNU1-143P-201ENST00000516296 146 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AC093249.1-201ENST00000567049 203 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 MIR4700-201ENST00000578311 74 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AL158827.2-201ENST00000602494 330 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 U1.23-201ENST00000610293 146 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 MIR6716-201ENST00000613413 80 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 RNU1-68P-201ENST00000615382 146 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AL445567.2-201ENST00000618935 498 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AC090971.5-201ENST00000621102 293 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 U1.39-201ENST00000621562 146 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 SNORA43.4-201ENST00000629559 138 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AL691447.3-201ENST00000635020 330 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 MIR7157-201ENST00000635801 60 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.9□□□□□ -1.94
CCDC28AQ8IWP9 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 Y_RNA.40-201ENST00000362645 93 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 Y_RNA.48-201ENST00000362710 103 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-655P-201ENST00000362858 107 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 SNORA70C-201ENST00000384538 135 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 SNORA26.3-201ENST00000391119 136 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AC096664.2-201ENST00000411843 406 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 RPL32P35-201ENST00000415214 394 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AC243428.1-201ENST00000421099 264 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AL691449.1-201ENST00000426570 421 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 MTND1P14-201ENST00000427400 950 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AL357552.1-201ENST00000445254 415 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AC010618.1-201ENST00000469924 477 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AC022447.4-201ENST00000504053 364 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 RNU2-27P-201ENST00000516185 142 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-264P-201ENST00000517134 104 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 MIR2116-201ENST00000517221 80 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AC107934.2-201ENST00000518653 310 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AC021231.3-201ENST00000558497 370 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 MIR5571-201ENST00000577998 113 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 MIR3136-201ENST00000583498 78 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 MIR4719-201ENST00000585233 84 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 AC091167.4-201ENST00000605079 184 ntBASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC28AQ8IWP9 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC126755.2-208ENST00000327792 462 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC138969.1-213ENST00000331436 462 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-1210P-201ENST00000363775 107 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-595P-201ENST00000363944 107 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AL590135.1-201ENST00000422215 156 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC019205.3-201ENST00000424573 156 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC016700.2-201ENST00000446011 156 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 RPS23P7-201ENST00000466210 444 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 RPL30P1-201ENST00000488676 339 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC096576.1-201ENST00000489014 359 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC015911.1-201ENST00000495111 156 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AIG1P1-201ENST00000503376 148 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC022493.2-201ENST00000506122 481 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-470P-201ENST00000515954 104 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 Y_RNA.701-201ENST00000516812 110 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 MRPS36P4-201ENST00000534436 298 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC027176.1-201ENST00000560204 514 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC044792.1-201ENST00000593294 196 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 7SK.7-201ENST00000603504 247 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC005014.2-201ENST00000607795 599 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AL731566.2-201ENST00000618971 317 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 MIR6830-201ENST00000636015 70 ntBASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC28AQ8IWP9 AC138915.1-201ENST00000565427 1685 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RNY1P16-201ENST00000363063 111 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RNU4-56P-201ENST00000364700 142 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 SNORA46-201ENST00000384762 135 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RPL21P75-201ENST00000396599 483 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RPL21P28-201ENST00000401418 483 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 RNU6-1328P-201ENST00000410938 106 ntBASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC28AQ8IWP9 EIF4EP4-201ENST00000424916 578 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms