Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC139713.2-215ENST00000641428 5037 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 RNA5SP513-201ENST00000364648 118 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 Z98749.2-208ENST00000381646 500 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-376P-201ENST00000384731 106 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 MIR518D-201ENST00000385014 87 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 SNORD66.1-201ENST00000391230 76 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-1064P-201ENST00000410626 104 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 FTH1P6-201ENST00000430768 320 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 GOT2P5-201ENST00000433995 546 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 RPL37P4-201ENST00000448908 268 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 snoU13.6-201ENST00000458785 104 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC146944.2-203ENST00000502493 354 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 PPBPP1-201ENST00000510807 373 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC139495.1-202ENST00000513164 354 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC079587.1-201ENST00000603846 277 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC039056.2-201ENST00000622261 511 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 AC099654.7-201ENST00000635788 2127 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 ANKRD30BP1-201ENST00000451052 2186 ntBASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.91□□□□□ -1.62
SH3RF1Q7Z6J0 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SH3RF1Q7Z6J0 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
SH3RF1Q7Z6J0 MAPK10-320ENST00000641462 6696 ntBASIC4.9□□□□□ -1.62
SH3RF1Q7Z6J0 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.9□□□□□ -1.62
SH3RF1Q7Z6J0 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SH3RF1Q7Z6J0 AC092268.1-201ENST00000342691 405 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 RNU6-199P-201ENST00000362954 107 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 RNU6-270P-201ENST00000364131 105 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 SNORD46.1-201ENST00000364139 104 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 SNORA20-201ENST00000384662 132 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 AL512633.1-201ENST00000399931 655 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 RNU6ATAC19P-201ENST00000408096 110 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 RN7SKP61-201ENST00000410642 295 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 RPS20P14-201ENST00000412545 360 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 AC074117.2-201ENST00000417130 397 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 RPS12P23-201ENST00000419579 400 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 AC078809.1-201ENST00000427601 140 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 HLA-N-201ENST00000437516 135 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 AC007969.2-201ENST00000441891 191 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 snoU13.24-201ENST00000458998 104 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 RN7SL691P-201ENST00000494487 301 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 RNU6-966P-201ENST00000516479 104 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 Y_RNA.709-201ENST00000516952 92 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 CARD18-203ENST00000532895 422 ntTSL 2 BASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 AP004242.1-201ENST00000533701 349 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 AC069240.1-201ENST00000548774 375 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 DNAJC19P2-201ENST00000593340 302 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 SNRPGP15-201ENST00000600149 222 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 AC006380.1-201ENST00000603598 186 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 AL359198.2-201ENST00000611836 194 ntBASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.9□□□□□ -1.63
SH3RF1Q7Z6J0 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 SRP72P2-201ENST00000344851 1979 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 RNA5SP130-201ENST00000364431 114 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 SNORA36A-201ENST00000384221 132 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 Y_RNA.542-201ENST00000384641 111 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 MIR124-3-201ENST00000384866 87 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 RNU2-54P-201ENST00000410299 190 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 RNA5SP475-201ENST00000410568 110 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 RPL23AP58-201ENST00000440453 469 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 AC012308.1-201ENST00000451232 178 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 RN7SKP164-201ENST00000516138 266 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 SNORA31.8-201ENST00000516327 108 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 AC100767.1-201ENST00000528178 123 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 TVP23BP1-201ENST00000557500 617 ntBASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SH3RF1Q7Z6J0 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms