Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 Y_RNA.396-201ENST00000383949 103 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 RNU6-17P-201ENST00000384245 107 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 RNU6-472P-201ENST00000384299 107 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 Y_RNA.471-201ENST00000384312 102 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 RNU6-18P-201ENST00000384527 107 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 RNU6-1222P-201ENST00000384615 107 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 AP000567.1-201ENST00000406413 156 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 AL035423.1-201ENST00000420331 213 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.72□□□□□ -1.81
USP53Q70EK8 RPL21P40-201ENST00000428586 483 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 RPEP5-201ENST00000441137 268 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 TOMM22P6-201ENST00000465035 409 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 AC104564.1-201ENST00000493028 407 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.72□□□□□ -1.81
USP53Q70EK8 RNU6-1143P-201ENST00000516125 104 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 ACA59.2-201ENST00000517061 156 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 RNU6-897P-201ENST00000517135 105 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.72□□□□□ -1.81
USP53Q70EK8 AP000867.2-201ENST00000532468 320 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.72□□□□□ -1.81
USP53Q70EK8 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.72□□□□□ -1.81
USP53Q70EK8 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.72□□□□□ -1.81
USP53Q70EK8 MIR5195-201ENST00000583555 115 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 RMST_6.1-201ENST00000611980 203 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 AC091903.1-201ENST00000624322 454 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.72□□□□□ -1.81
USP53Q70EK8 IPO8P1-201ENST00000455509 3109 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USP53Q70EK8 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP53Q70EK8 ZNF826P-207ENST00000622273 1910 ntBASIC3.72□□□□□ -1.81
USP53Q70EK8 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.72□□□□□ -1.81
USP53Q70EK8 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.71□□□□□ -1.81
USP53Q70EK8 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.71□□□□□ -1.82
USP53Q70EK8 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
USP53Q70EK8 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP53Q70EK8 RNU6-770P-201ENST00000363929 105 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 RNU6-1141P-201ENST00000364520 107 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 RNU6-611P-201ENST00000384276 104 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 RNU1-89P-201ENST00000384592 164 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 MIR544A-201ENST00000384855 91 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 MIR183-201ENST00000384958 110 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 Z92545.1-201ENST00000411782 234 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 AC023141.4-201ENST00000412031 328 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 RPL23AP22-201ENST00000437556 453 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.71□□□□□ -1.82
USP53Q70EK8 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 CYCSP35-201ENST00000451978 304 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 RNU7-87P-201ENST00000459343 62 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 RN7SL283P-201ENST00000489055 303 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 AF186996.7-201ENST00000492781 209 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.71□□□□□ -1.82
USP53Q70EK8 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.71□□□□□ -1.82
USP53Q70EK8 SNORA40.15-201ENST00000516884 107 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 RNU6-1271P-201ENST00000517049 105 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 IGHV3-76-201ENST00000522465 295 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 AP002770.2-201ENST00000543613 532 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 AC090617.3-201ENST00000573670 475 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 AC125232.2-201ENST00000592457 143 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 AC062037.2-201ENST00000610137 73 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP53Q70EK8 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP53Q70EK8 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP53Q70EK8 AL353743.1-202ENST00000431724 1695 ntBASIC3.71□□□□□ -1.82
USP53Q70EK8 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP53Q70EK8 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.7□□□□□ -1.82
USP53Q70EK8 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
USP53Q70EK8 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP53Q70EK8 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP53Q70EK8 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.7□□□□□ -1.82
USP53Q70EK8 AC010680.1-201ENST00000590024 3590 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 Y_RNA.111-201ENST00000363248 100 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 Y_RNA.222-201ENST00000364264 102 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.7□□□□□ -1.82
USP53Q70EK8 RNU6-142P-201ENST00000384019 107 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 SNORA29-201ENST00000384183 140 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 RNY3P4-201ENST00000384428 101 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 RN7SKP61-201ENST00000410642 295 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 RNA5SP38-201ENST00000410750 119 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 RNU6-130P-201ENST00000411112 103 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 AL161651.1-201ENST00000440882 223 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.7□□□□□ -1.82
USP53Q70EK8 PCNPP5-201ENST00000452246 481 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.7□□□□□ -1.82
USP53Q70EK8 U8.22-201ENST00000459141 133 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 SNRPGP3-201ENST00000469405 227 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.7□□□□□ -1.82
USP53Q70EK8 RNU6-408P-201ENST00000515910 100 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 RNU5F-8P-201ENST00000515941 111 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 RNU6-397P-201ENST00000516226 104 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 RNY3P15-201ENST00000516297 97 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.7□□□□□ -1.82
USP53Q70EK8 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.7□□□□□ -1.82
USP53Q70EK8 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.7□□□□□ -1.82
USP53Q70EK8 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.7□□□□□ -1.82
USP53Q70EK8 AC068831.7-201ENST00000616954 363 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.7□□□□□ -1.82
USP53Q70EK8 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.7□□□□□ -1.82
USP53Q70EK8 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
USP53Q70EK8 UBE3AP2-201ENST00000429033 2259 ntBASIC3.7□□□□□ -1.82
USP53Q70EK8 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 197.8 ms