Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SCARNA16.2-201ENST00000516520 172 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 MTCO2P2-201ENST00000591258 225 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC105148.1-201ENST00000604961 409 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC107952.2-201ENST00000606048 486 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC027335.2-201ENST00000624030 375 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC080188.3-201ENST00000624842 748 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 U6.101-201ENST00000637707 76 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AL159152.1-201ENST00000635019 2587 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 RNU6-140P-201ENST00000384566 108 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 MIR1305-201ENST00000408300 86 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AL135790.2-201ENST00000437701 267 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 RPL39P6-201ENST00000448289 150 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC012213.3-201ENST00000577199 777 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 OR5T3-201ENST00000303059 1023 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 RNU6-546P-201ENST00000383991 107 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AL109755.1-201ENST00000401791 649 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 OARD1-209ENST00000471367 401 ntTSL 2 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 HMGN1P13-201ENST00000505795 138 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 RNA5SP135-201ENST00000517019 125 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 NACAP3-201ENST00000552100 481 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 MIR4493-201ENST00000584016 73 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AL512506.2-201ENST00000624472 458 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 RNU1-96P-201ENST00000364163 162 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 RNU1-36P-201ENST00000365130 165 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 RNU6-40P-201ENST00000384254 107 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 RNU2-48P-201ENST00000410694 191 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC010099.3-201ENST00000423896 409 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC005345.1-201ENST00000431868 217 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC132479.1-201ENST00000449160 144 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 VBP1-203ENST00000535916 944 ntTSL 2 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC100812.1-201ENST00000607622 580 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AC009237.15-201ENST00000610252 501 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.25□□□□□ -2.37
CHD9Q3L8U1 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC0.25□□□□□ -2.37
CHD9Q3L8U1 RNU6-529P-201ENST00000363383 104 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNU6-1280P-201ENST00000365211 107 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNU6-338P-201ENST00000383888 105 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNU6-439P-201ENST00000384188 106 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNU6-1065P-201ENST00000384513 106 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNU6-360P-201ENST00000390944 104 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNU6-754P-201ENST00000391166 107 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 UBE2V1P4-201ENST00000425374 344 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RPS27P16-201ENST00000425758 201 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 PSMA6P3-201ENST00000428242 164 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNA5SP269-201ENST00000459032 137 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC093677.1-201ENST00000514414 678 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 MIR4782-201ENST00000577987 79 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 VN1R83P-201ENST00000595685 445 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC073410.2-201ENST00000603240 332 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC069114.2-201ENST00000604699 304 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AL022345.2-201ENST00000606307 135 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AL163051.2-201ENST00000618976 735 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC084824.4-201ENST00000620106 731 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 MIR214-201ENST00000385214 110 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RPS3AP36-201ENST00000398190 775 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 MTND1P21-201ENST00000412991 285 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AL451054.2-201ENST00000420896 202 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 COX6CP6-201ENST00000490840 228 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNU6-567P-201ENST00000516746 107 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 CYP3A52P-201ENST00000563326 91 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 HMGB1P33-201ENST00000563485 527 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AP001180.6-201ENST00000584918 159 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 MTND4P21-201ENST00000453886 1357 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 Y_RNA.288-201ENST00000364854 92 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 MIR938-201ENST00000401216 83 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNU2-23P-201ENST00000410545 195 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 PIGFP2-201ENST00000421400 651 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC019178.2-201ENST00000423595 505 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 PTGES3P1-201ENST00000439531 483 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RAB11AP1-201ENST00000442978 646 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AL353752.1-201ENST00000454946 260 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 snoU13.11-201ENST00000459219 104 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 RNA5SP255-201ENST00000516370 107 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms