Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC0.72□□□□□ -2.29
CHD3Q12873 RPS15AP10-201ENST00000432472 382 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.72□□□□□ -2.29
CHD3Q12873 SEPT14P24-201ENST00000447236 180 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AC092001.1-201ENST00000453012 261 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
CHD3Q12873 AC092989.1-201ENST00000481235 277 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC0.72□□□□□ -2.29
CHD3Q12873 AC104072.1-201ENST00000568817 668 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AC098483.2-201ENST00000603158 454 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 MIR6134-201ENST00000617606 109 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AL159153.1-201ENST00000619688 317 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AC091925.1-201ENST00000623204 462 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 Y_RNA.67-201ENST00000362870 100 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 Y_RNA.85-201ENST00000363014 111 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 RNA5SP493-201ENST00000364115 91 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 RN7SKP200-201ENST00000410564 320 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD3Q12873 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.71□□□□□ -2.3
CHD3Q12873 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD3Q12873 SNRPEP7-201ENST00000438350 220 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AL353752.1-201ENST00000454946 260 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD3Q12873 AC109927.2-201ENST00000506416 303 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.71□□□□□ -2.3
CHD3Q12873 BNIP3P9-201ENST00000603714 553 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 NDUFA8P1-201ENST00000605525 367 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AC034229.4-201ENST00000607861 441 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
CHD3Q12873 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
CHD3Q12873 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
CHD3Q12873 RNU1-124P-201ENST00000363861 145 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 RNU6-236P-201ENST00000363886 106 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 RNU6-744P-201ENST00000365557 107 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 RNU6-1316P-201ENST00000384242 108 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 RNA5SP100-201ENST00000410903 110 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 RNA5SP59-201ENST00000410922 110 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 RNU6-575P-201ENST00000411326 105 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AC009518.2-201ENST00000418056 731 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AC013410.2-201ENST00000422627 201 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 MTCO3P43-201ENST00000440974 771 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD3Q12873 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD3Q12873 MRPS36P5-201ENST00000551909 298 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD3Q12873 AC005786.1-201ENST00000588553 154 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AC004908.3-201ENST00000610248 625 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AC123767.1-202ENST00000620407 817 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 AC027335.2-201ENST00000624030 375 ntBASIC0.71□□□□□ -2.3
CHD3Q12873 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.7□□□□□ -2.3
CHD3Q12873 SNORD114-19-201ENST00000363072 75 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 SNORA25B-201ENST00000365507 128 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 AC083875.1-201ENST00000419509 405 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC0.7□□□□□ -2.3
CHD3Q12873 AC010153.1-201ENST00000432862 727 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.7□□□□□ -2.3
CHD3Q12873 GTF2IP13-201ENST00000438487 386 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC0.7□□□□□ -2.3
CHD3Q12873 AC112492.4-201ENST00000456549 352 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 AC018868.1-201ENST00000491307 315 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 RNU6-1028P-201ENST00000517164 93 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 RNU6-586P-201ENST00000517265 104 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.7□□□□□ -2.3
CHD3Q12873 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC0.7□□□□□ -2.3
CHD3Q12873 AC006270.3-201ENST00000605967 1036 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 AC012676.2-201ENST00000619258 186 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC0.7□□□□□ -2.3
CHD3Q12873 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.7□□□□□ -2.3
CHD3Q12873 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
CHD3Q12873 MIR424-201ENST00000362227 98 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 RNU6-188P-201ENST00000364207 107 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 RNU6-512P-201ENST00000364438 103 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 RNA5SP501-201ENST00000410990 112 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 RNU4-22P-201ENST00000411058 166 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD3Q12873 MRPS36P1-201ENST00000421291 307 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 AL953862.1-201ENST00000423016 168 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 DYNLT3P2-201ENST00000442517 295 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD3Q12873 SNORD116-28-201ENST00000516123 91 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 RNA5SP404-201ENST00000517118 132 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 AC018630.3-201ENST00000542637 96 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD3Q12873 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC0.69□□□□□ -2.3
CHD3Q12873 MIR8087-201ENST00000612745 78 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD3Q12873 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD3Q12873 C1DP1-201ENST00000426049 402 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 AC104651.1-201ENST00000427559 735 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 AL035666.1-201ENST00000446195 348 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD3Q12873 MTCYBP40-201ENST00000509390 1135 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 AC093259.1-201ENST00000509755 300 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 MTCYBP43-201ENST00000513621 740 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD3Q12873 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.69□□□□□ -2.3
CHD3Q12873 RPL30P11-203ENST00000598995 310 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms