Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.13□□□□□ -2.39
COL7A1Q02388 AL365434.2-201ENST00000607979 234 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 AL163051.2-201ENST00000618976 735 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 MIR5739-201ENST00000619803 80 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AL512506.2-201ENST00000624472 458 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 RNU6-543P-201ENST00000362576 108 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNA5SP214-201ENST00000363378 118 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU5E-8P-201ENST00000363502 116 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 SNORD18A-201ENST00000363753 72 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU6-188P-201ENST00000364207 107 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC0.12□□□□□ -2.39
COL7A1Q02388 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU6-945P-201ENST00000383947 107 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU6-40P-201ENST00000384254 107 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU6-1222P-201ENST00000384615 107 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MIR29C-201ENST00000385231 88 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MT-TQ-201ENST00000387372 72 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU6-952P-201ENST00000391164 108 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MTCO2P31-201ENST00000402702 684 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MIR1285-2-201ENST00000408311 88 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 SNORD99-201ENST00000408612 74 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 USP9YP26-201ENST00000421008 661 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 USP9YP18-201ENST00000425912 695 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.12□□□□□ -2.39
COL7A1Q02388 USP9YP24-201ENST00000434374 697 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AL049734.2-201ENST00000441066 616 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 USP9YP17-201ENST00000444617 696 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.12□□□□□ -2.39
COL7A1Q02388 RPL39P6-201ENST00000448289 150 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AC104073.1-201ENST00000451988 151 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MTCO2P18-201ENST00000457151 658 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU7-90P-201ENST00000459216 62 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU6-287P-201ENST00000516230 98 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU6-965P-201ENST00000516721 96 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 SCARNA3-201ENST00000517097 143 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNA5SP290-201ENST00000517133 127 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 COPS8P3-201ENST00000526024 482 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AL136363.2-201ENST00000604173 851 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AC100814.1-201ENST00000606963 623 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AC010975.3-201ENST00000618727 978 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AL109620.1-201ENST00000618738 1197 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.12□□□□□ -2.39
COL7A1Q02388 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.12□□□□□ -2.39
COL7A1Q02388 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.12□□□□□ -2.39
COL7A1Q02388 DLEU2_6.3-201ENST00000340052 136 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU6-1005P-201ENST00000384519 107 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 SNORA12-201ENST00000391162 147 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 DHFRP6-201ENST00000401776 268 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AL133264.1-201ENST00000407157 562 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MIR1305-201ENST00000408300 86 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MIR1290-201ENST00000408735 78 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU2-48P-201ENST00000410694 191 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RPL26P27-201ENST00000414397 437 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 BTF3L4P3-201ENST00000418879 476 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 BTF3P11-201ENST00000426582 477 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 GPM6BP2-201ENST00000432046 144 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AL512844.2-201ENST00000433990 593 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MTCO2P20-201ENST00000437339 673 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 GPM6BP1-201ENST00000446387 144 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 KATNBL1P6-201ENST00000453433 915 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AC010460.2-201ENST00000509054 677 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.12□□□□□ -2.39
COL7A1Q02388 SCARNA16.2-201ENST00000516520 172 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RNA5SP135-201ENST00000517019 125 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AC095057.3-201ENST00000567102 1157 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 ADAM3B-201ENST00000569937 840 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC0.12□□□□□ -2.39
COL7A1Q02388 AC090330.1-201ENST00000588646 764 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AL671309.1-201ENST00000603750 544 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 MIR8074-201ENST00000615081 81 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 AC073968.1-201ENST00000618594 637 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 DLEU2_6.2-201ENST00000620994 136 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.12□□□□□ -2.39
COL7A1Q02388 U6.101-201ENST00000637707 76 ntBASIC0.12□□□□□ -2.39
COL7A1Q02388 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.12□□□□□ -2.39
COL7A1Q02388 RNU6-349P-201ENST00000362402 107 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 RNU6-819P-201ENST00000364116 107 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.11□□□□□ -2.39
COL7A1Q02388 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.11□□□□□ -2.39
COL7A1Q02388 RNU6-432P-201ENST00000384196 109 ntBASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms