Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RPL23AP75-201ENST00000491601 451 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 AC074250.1-201ENST00000511117 192 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 RNU6-397P-201ENST00000516226 104 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA4Q00056 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA4Q00056 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA4Q00056 AC107871.2-201ENST00000612894 502 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA4Q00056 AC233981.2-201ENST00000611524 1614 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA4Q00056 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXA4Q00056 AC106871.1-201ENST00000568324 3102 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC2.95□□□□□ -1.94
HOXA4Q00056 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXA4Q00056 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXA4Q00056 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC2.95□□□□□ -1.94
HOXA4Q00056 MIR423-201ENST00000362201 94 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 Y_RNA.64-201ENST00000362845 102 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 RNU1-140P-201ENST00000365040 165 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXA4Q00056 MIR628-201ENST00000385229 95 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 SNORD17-201ENST00000390930 237 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXA4Q00056 MTCYBP2-201ENST00000407745 171 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 AC023141.4-201ENST00000412031 328 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 MTCO3P19-201ENST00000415864 321 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 AC002075.2-201ENST00000425207 252 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXA4Q00056 CBX3P6-201ENST00000430257 527 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 RPL23AP22-201ENST00000437556 453 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 RPS29P31-201ENST00000446147 164 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.95□□□□□ -1.94
HOXA4Q00056 AL590664.1-201ENST00000448065 339 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 U8.22-201ENST00000459141 133 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 TOMM22P6-201ENST00000465035 409 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXA4Q00056 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXA4Q00056 RNU6-911P-201ENST00000516523 104 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 RN7SKP272-201ENST00000516988 232 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 SNORA31.23-201ENST00000517219 133 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 AC109329.1-201ENST00000518744 317 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA4Q00056 AC090517.1-201ENST00000569307 266 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 MIR4738-201ENST00000579134 87 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 RPS29P30-201ENST00000600975 111 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 AC100812.1-201ENST00000607622 580 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 MIR6076-201ENST00000617521 113 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 AL159153.1-201ENST00000619688 317 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 MIR8062-201ENST00000621515 85 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC2.95□□□□□ -1.94
HOXA4Q00056 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXA4Q00056 AC110491.1-201ENST00000562191 2010 ntBASIC2.95□□□□□ -1.94
HOXA4Q00056 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXA4Q00056 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
HOXA4Q00056 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA4Q00056 ADAM3A-203ENST00000461344 2157 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 SNORD32A-201ENST00000364805 84 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 Y_RNA.396-201ENST00000383949 103 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 RNU6-968P-201ENST00000384076 107 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 MIR23B-201ENST00000384832 97 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 MIR544A-201ENST00000384855 91 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
HOXA4Q00056 RNU6-1245P-201ENST00000411130 106 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXA4Q00056 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA4Q00056 AL358453.1-201ENST00000422522 250 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 RPL23AP82-202ENST00000427528 469 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXA4Q00056 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA4Q00056 AC008155.2-201ENST00000464337 397 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 SNRPGP7-201ENST00000469016 106 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 RN7SL283P-201ENST00000489055 303 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 AC097462.2-201ENST00000504623 481 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXA4Q00056 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA4Q00056 SNORA25.11-201ENST00000515935 105 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 RNY3P15-201ENST00000516297 97 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 RNU6-897P-201ENST00000517135 105 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA4Q00056 AC026333.2-201ENST00000542164 106 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 AC006199.1-201ENST00000548728 219 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXA4Q00056 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC2.94□□□□□ -1.94
HOXA4Q00056 MIR4444-1-201ENST00000581696 74 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 MIR4444-2-201ENST00000584390 74 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 AC125232.2-201ENST00000592457 143 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 RPL23AP78-201ENST00000599928 470 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 MIR92B-201ENST00000607575 96 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 AC002076.2-201ENST00000617362 122 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 AC024581.2-201ENST00000619986 252 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA4Q00056 PWAR6-201ENST00000552334 4618 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA4Q00056 AC068647.1-201ENST00000489539 2265 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 AF117829.1-206ENST00000621883 3802 ntBASIC2.94□□□□□ -1.94
HOXA4Q00056 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
HOXA4Q00056 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXA4Q00056 Z75746.1-201ENST00000440243 2080 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms