Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZYXP1-201ENST00000617638 118 ntBASIC3.82□□□□□ -1.8
RNF4P78317 AC068724.3-201ENST00000625906 87 ntBASIC3.82□□□□□ -1.8
RNF4P78317 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.82□□□□□ -1.8
RNF4P78317 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.82□□□□□ -1.8
RNF4P78317 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
RNF4P78317 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
RNF4P78317 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
RNF4P78317 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
RNF4P78317 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
RNF4P78317 AL672296.1-201ENST00000427780 2158 ntBASIC3.82□□□□□ -1.8
RNF4P78317 RBBP8P1-201ENST00000449447 1844 ntBASIC3.81□□□□□ -1.8
RNF4P78317 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF4P78317 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.81□□□□□ -1.8
RNF4P78317 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
RNF4P78317 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF4P78317 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF4P78317 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF4P78317 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF4P78317 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.81□□□□□ -1.8
RNF4P78317 OTUD4P1-201ENST00000237841 3067 ntBASIC3.81□□□□□ -1.8
RNF4P78317 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
RNF4P78317 Y_RNA.180-201ENST00000363867 113 ntBASIC3.81□□□□□ -1.8
RNF4P78317 RNU6-961P-201ENST00000363893 105 ntBASIC3.81□□□□□ -1.8
RNF4P78317 MIR329-1-201ENST00000385028 80 ntBASIC3.81□□□□□ -1.8
RNF4P78317 RNU6-1140P-201ENST00000410517 106 ntBASIC3.81□□□□□ -1.8
RNF4P78317 HSPE1P12-201ENST00000412576 301 ntBASIC3.81□□□□□ -1.8
RNF4P78317 OR4C10P-201ENST00000434991 931 ntBASIC3.81□□□□□ -1.8
RNF4P78317 AC244670.1-201ENST00000436879 112 ntBASIC3.81□□□□□ -1.8
RNF4P78317 AP000705.1-201ENST00000454567 350 ntBASIC3.81□□□□□ -1.8
RNF4P78317 HMGN2P16-201ENST00000456802 261 ntBASIC3.81□□□□□ -1.8
RNF4P78317 PPIAP15-201ENST00000479662 484 ntBASIC3.81□□□□□ -1.8
RNF4P78317 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.81□□□□□ -1.8
RNF4P78317 SEPT14P8-201ENST00000508026 178 ntBASIC3.81□□□□□ -1.8
RNF4P78317 RNU5F-8P-201ENST00000515941 111 ntBASIC3.81□□□□□ -1.8
RNF4P78317 RN7SKP21-201ENST00000516503 220 ntBASIC3.81□□□□□ -1.8
RNF4P78317 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.81□□□□□ -1.8
RNF4P78317 CYP4A43P-201ENST00000568156 121 ntBASIC3.81□□□□□ -1.8
RNF4P78317 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.81□□□□□ -1.8
RNF4P78317 MIR3529-201ENST00000637713 78 ntBASIC3.81□□□□□ -1.8
RNF4P78317 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF4P78317 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
RNF4P78317 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.81□□□□□ -1.8
RNF4P78317 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.81□□□□□ -1.8
RNF4P78317 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.81□□□□□ -1.8
RNF4P78317 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
RNF4P78317 AC110491.1-201ENST00000562191 2010 ntBASIC3.8□□□□□ -1.8
RNF4P78317 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.8□□□□□ -1.8
RNF4P78317 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
RNF4P78317 SPRR2C-201ENST00000290702 219 ntBASIC3.8□□□□□ -1.8
RNF4P78317 SNORA60-201ENST00000362396 134 ntBASIC3.8□□□□□ -1.8
RNF4P78317 Y_RNA.199-201ENST00000364014 102 ntBASIC3.8□□□□□ -1.8
RNF4P78317 RNU6-20P-201ENST00000384106 107 ntBASIC3.8□□□□□ -1.8
RNF4P78317 MIR549A-201ENST00000385268 96 ntBASIC3.8□□□□□ -1.8
RNF4P78317 RNU5A-5P-201ENST00000411054 116 ntBASIC3.8□□□□□ -1.8
RNF4P78317 RPL23AP3-201ENST00000453844 468 ntBASIC3.8□□□□□ -1.8
RNF4P78317 Y_RNA.644-201ENST00000459006 113 ntBASIC3.8□□□□□ -1.8
RNF4P78317 snoU13.28-201ENST00000459235 104 ntBASIC3.8□□□□□ -1.8
RNF4P78317 RPL23AP62-201ENST00000463396 453 ntBASIC3.8□□□□□ -1.8
RNF4P78317 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.8□□□□□ -1.8
RNF4P78317 RPL29P14-201ENST00000495837 428 ntBASIC3.8□□□□□ -1.8
RNF4P78317 AC108043.1-201ENST00000512696 574 ntBASIC3.8□□□□□ -1.8
RNF4P78317 SNORA40.9-201ENST00000515895 93 ntBASIC3.8□□□□□ -1.8
RNF4P78317 Y_RNA.674-201ENST00000516362 113 ntBASIC3.8□□□□□ -1.8
RNF4P78317 RNU2-31P-201ENST00000516954 155 ntBASIC3.8□□□□□ -1.8
RNF4P78317 CKS1BP7-201ENST00000522230 235 ntBASIC3.8□□□□□ -1.8
RNF4P78317 AC024405.2-202ENST00000532731 184 ntBASIC3.8□□□□□ -1.8
RNF4P78317 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.8□□□□□ -1.8
RNF4P78317 AC021231.3-201ENST00000558497 370 ntBASIC3.8□□□□□ -1.8
RNF4P78317 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.8□□□□□ -1.8
RNF4P78317 MIR4423-201ENST00000580922 80 ntBASIC3.8□□□□□ -1.8
RNF4P78317 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.8□□□□□ -1.8
RNF4P78317 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.8□□□□□ -1.8
RNF4P78317 HSPE1P7-201ENST00000604681 321 ntBASIC3.8□□□□□ -1.8
RNF4P78317 AL138963.2-201ENST00000605137 226 ntBASIC3.8□□□□□ -1.8
RNF4P78317 AL357075.2-201ENST00000614906 189 ntBASIC3.8□□□□□ -1.8
RNF4P78317 RNA5SP196-201ENST00000625967 102 ntBASIC3.8□□□□□ -1.8
RNF4P78317 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
RNF4P78317 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.8□□□□□ -1.8
RNF4P78317 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
RNF4P78317 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
RNF4P78317 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
RNF4P78317 CUL1P1-201ENST00000509510 2425 ntBASIC3.8□□□□□ -1.8
RNF4P78317 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
RNF4P78317 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.79□□□□□ -1.8
RNF4P78317 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.79□□□□□ -1.8
RNF4P78317 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.79□□□□□ -1.8
RNF4P78317 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.79□□□□□ -1.8
RNF4P78317 RNU6-626P-201ENST00000363354 107 ntBASIC3.79□□□□□ -1.8
RNF4P78317 RNU6-873P-201ENST00000363833 107 ntBASIC3.79□□□□□ -1.8
RNF4P78317 RNA5SP515-201ENST00000364570 118 ntBASIC3.79□□□□□ -1.8
RNF4P78317 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
RNF4P78317 Y_RNA.569-201ENST00000384749 103 ntBASIC3.79□□□□□ -1.8
RNF4P78317 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
RNF4P78317 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.79□□□□□ -1.8
RNF4P78317 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.79□□□□□ -1.8
RNF4P78317 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.79□□□□□ -1.8
RNF4P78317 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.79□□□□□ -1.8
RNF4P78317 HLA-N-201ENST00000437516 135 ntBASIC3.79□□□□□ -1.8
RNF4P78317 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.79□□□□□ -1.8
RNF4P78317 AC117440.1-201ENST00000474107 571 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms