Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC2.06□□□□□ -2.08
COL4A4P53420 SUB1P1-201ENST00000524415 382 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 COPS8P3-201ENST00000526024 482 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
COL4A4P53420 AP000907.2-201ENST00000530827 353 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 DNAJC8P1-201ENST00000554535 372 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.06□□□□□ -2.08
COL4A4P53420 LARP7P2-201ENST00000575306 125 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 MIR3672-201ENST00000584290 82 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AP001029.3-201ENST00000588063 596 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AP001330.4-201ENST00000604350 154 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 AL442067.1-201ENST00000613261 223 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC095038.3-201ENST00000634439 195 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 MTND4LP32-201ENST00000636111 270 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.05□□□□□ -2.08
COL4A4P53420 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
COL4A4P53420 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
COL4A4P53420 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 RNU6-1309P-201ENST00000363305 108 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 Y_RNA.184-201ENST00000363884 108 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 RNU6-744P-201ENST00000365557 107 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 RNU6-1316P-201ENST00000384242 108 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 RNU6-278P-201ENST00000390945 109 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
COL4A4P53420 RNU6-1304P-201ENST00000411374 106 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 AC114482.1-201ENST00000418010 247 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 HSPE1P1-201ENST00000421494 318 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 WARS2P1-201ENST00000429678 537 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.05□□□□□ -2.08
COL4A4P53420 RPL23AP30-201ENST00000432419 501 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 YWHAZP8-201ENST00000436935 731 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.05□□□□□ -2.08
COL4A4P53420 HSPE1P28-201ENST00000443139 211 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.05□□□□□ -2.08
COL4A4P53420 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.05□□□□□ -2.08
COL4A4P53420 AL356010.1-201ENST00000456364 102 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 AC092798.1-201ENST00000458542 409 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 GMFBP1-201ENST00000467831 427 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 RPS26P21-201ENST00000475397 348 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 RPL7P43-201ENST00000478876 753 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC2.05□□□□□ -2.08
COL4A4P53420 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.05□□□□□ -2.08
COL4A4P53420 AC004062.1-201ENST00000509926 645 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 AC093303.1-201ENST00000514549 295 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 SNORD116-26-201ENST00000516006 96 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 SNORA40.12-201ENST00000516329 111 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 RNA5SP309-201ENST00000516670 106 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 RNU6-1220P-201ENST00000517126 108 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.05□□□□□ -2.08
COL4A4P53420 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.05□□□□□ -2.08
COL4A4P53420 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC2.05□□□□□ -2.08
COL4A4P53420 MIR5690-201ENST00000583739 73 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 MIR3149-201ENST00000584629 83 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.05□□□□□ -2.08
COL4A4P53420 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.05□□□□□ -2.08
COL4A4P53420 AC090425.1-201ENST00000610007 140 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 AC087588.2-201ENST00000617667 426 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 U4.1-201ENST00000620349 87 ntBASIC2.05□□□□□ -2.08
COL4A4P53420 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.05□□□□□ -2.08
COL4A4P53420 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.05□□□□□ -2.08
COL4A4P53420 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
COL4A4P53420 AP001350.1-201ENST00000601906 1524 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 HSPE1P11-201ENST00000339579 310 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 Y_RNA.28-201ENST00000362554 111 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 Y_RNA.47-201ENST00000362697 108 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 RNU6-1188P-201ENST00000363795 107 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 RNU6-1029P-201ENST00000384109 107 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 MTCYBP4-201ENST00000401524 249 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 RNU6-847P-201ENST00000411115 108 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.04□□□□□ -2.08
COL4A4P53420 FABP5P14-201ENST00000437273 393 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 AL031663.1-201ENST00000437445 219 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 AL049734.2-201ENST00000441066 616 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 AL021397.1-201ENST00000451806 248 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 HMGN2P26-201ENST00000463169 339 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 RPS15AP17-201ENST00000470598 390 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 CCDC34P1-201ENST00000507441 517 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 AC026782.1-201ENST00000512952 449 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 RNU6-410P-201ENST00000517006 107 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
COL4A4P53420 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.04□□□□□ -2.08
COL4A4P53420 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.04□□□□□ -2.08
COL4A4P53420 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.04□□□□□ -2.08
COL4A4P53420 MIR5089-201ENST00000580047 84 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 MIR3683-201ENST00000580847 82 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 MIR3199-1-201ENST00000582434 88 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 AC009314.1-201ENST00000603871 304 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 AC011373.1-201ENST00000607270 237 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 AC005014.2-201ENST00000607795 599 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 AL355816.1-201ENST00000607951 118 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 MTND4P1-201ENST00000457501 1466 ntBASIC2.04□□□□□ -2.08
COL4A4P53420 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.04□□□□□ -2.08
COL4A4P53420 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
COL4A4P53420 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
COL4A4P53420 AC092125.1-201ENST00000562568 1995 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 Y_RNA.178-201ENST00000363832 102 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 RNU6-82P-201ENST00000363970 107 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 RNY3P13-201ENST00000365542 102 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms