Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
HOXA1P49639 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
HOXA1P49639 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.53□□□□□ -2
HOXA1P49639 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.53□□□□□ -2
HOXA1P49639 MIR369-201ENST00000362155 70 ntBASIC2.53□□□□□ -2
HOXA1P49639 RNU6-799P-201ENST00000363567 107 ntBASIC2.53□□□□□ -2
HOXA1P49639 Y_RNA.460-201ENST00000384255 102 ntBASIC2.53□□□□□ -2
HOXA1P49639 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXA1P49639 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXA1P49639 RNA5SP274-201ENST00000410484 108 ntBASIC2.53□□□□□ -2
HOXA1P49639 RNU6-1140P-201ENST00000410517 106 ntBASIC2.53□□□□□ -2
HOXA1P49639 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.53□□□□□ -2
HOXA1P49639 AL645568.3-201ENST00000433683 316 ntBASIC2.53□□□□□ -2
HOXA1P49639 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXA1P49639 AL161651.1-201ENST00000440882 223 ntBASIC2.53□□□□□ -2
HOXA1P49639 PCMTD1P1-201ENST00000455560 355 ntBASIC2.53□□□□□ -2
HOXA1P49639 FO393415.2-201ENST00000480085 343 ntBASIC2.53□□□□□ -2
HOXA1P49639 RPL23AP49-201ENST00000492925 468 ntBASIC2.53□□□□□ -2
HOXA1P49639 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.53□□□□□ -2
HOXA1P49639 MTCYBP40-201ENST00000509390 1135 ntBASIC2.53□□□□□ -2
HOXA1P49639 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.53□□□□□ -2
HOXA1P49639 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.53□□□□□ -2
HOXA1P49639 SNORA31.21-201ENST00000517180 77 ntBASIC2.53□□□□□ -2
HOXA1P49639 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.53□□□□□ -2
HOXA1P49639 AC011494.1-201ENST00000596454 237 ntBASIC2.53□□□□□ -2
HOXA1P49639 SRGNP1-201ENST00000603392 451 ntBASIC2.53□□□□□ -2
HOXA1P49639 AL353621.2-201ENST00000605340 133 ntBASIC2.53□□□□□ -2
HOXA1P49639 AC018462.2-201ENST00000605375 395 ntBASIC2.53□□□□□ -2
HOXA1P49639 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.53□□□□□ -2
HOXA1P49639 AC092608.2-201ENST00000624427 218 ntBASIC2.53□□□□□ -2
HOXA1P49639 AC099654.10-201ENST00000640395 161 ntBASIC2.53□□□□□ -2
HOXA1P49639 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.53□□□□□ -2
HOXA1P49639 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.53□□□□□ -2
HOXA1P49639 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.53□□□□□ -2
HOXA1P49639 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.53□□□□□ -2
HOXA1P49639 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2.01
HOXA1P49639 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA1P49639 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA1P49639 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA1P49639 SNORD56.1-201ENST00000362913 68 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 RNU6-527P-201ENST00000363425 104 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 RNU6-105P-201ENST00000363909 104 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 Y_RNA.315-201ENST00000365117 102 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 RNU6-43P-201ENST00000384302 107 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 RNU6-692P-201ENST00000384496 107 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 MIR521-1-201ENST00000384902 87 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 U3.19-201ENST00000390893 196 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 RNU6ATAC34P-201ENST00000408879 121 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 RNU6-293P-201ENST00000411259 106 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 RPS20P15-201ENST00000412792 311 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AL354751.2-201ENST00000415471 210 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA1P49639 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA1P49639 CR769767.1-201ENST00000436337 346 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AC013470.1-201ENST00000453438 462 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 NDUFAF4P3-201ENST00000456468 525 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA1P49639 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA1P49639 MIR2053-201ENST00000459295 91 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 RNU7-23P-201ENST00000459465 62 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 RN7SL542P-201ENST00000467147 294 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AC027575.1-201ENST00000481064 460 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA1P49639 RPPH1-2P-201ENST00000516688 293 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 ACA59.2-201ENST00000517061 156 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AC009812.2-201ENST00000517657 457 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AC107016.2-201ENST00000547968 190 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 MIR5194-201ENST00000582634 120 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXA1P49639 AC080078.3-201ENST00000605407 463 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AL133215.3-201ENST00000609801 448 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA1P49639 ZNF271P-202ENST00000465539 1970 ntBASIC2.52□□□□□ -2.01
HOXA1P49639 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA1P49639 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXA1P49639 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
HOXA1P49639 AC010680.1-201ENST00000590024 3590 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXA1P49639 Y_RNA.2-201ENST00000362330 96 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 RNU1-140P-201ENST00000365040 165 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 MIR7-3-201ENST00000384898 110 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXA1P49639 RNU2-25P-201ENST00000411041 191 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 AL451074.5-201ENST00000415894 435 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXA1P49639 AC009414.1-201ENST00000427200 443 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 AL133396.1-201ENST00000432048 687 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 AC236972.2-201ENST00000434979 310 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA1P49639 RNU6-1037P-201ENST00000459571 107 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 AC110794.1-201ENST00000505816 425 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA1P49639 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXA1P49639 SCARNA16.2-201ENST00000516520 172 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 Y_RNA.708-201ENST00000516950 96 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXA1P49639 AP002404.1-201ENST00000532005 451 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.51□□□□□ -2.01
HOXA1P49639 ANP32BP3-201ENST00000559213 706 ntBASIC2.51□□□□□ -2.01
HOXA1P49639 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms