Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNU7-182P-201ENST00000459009 62 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.86□□□□□ -2.11
SHMT2P34897 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.86□□□□□ -2.11
SHMT2P34897 RNA5SP182-201ENST00000516064 82 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.86□□□□□ -2.11
SHMT2P34897 PSMA3P-201ENST00000555485 635 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 AC090897.2-201ENST00000581715 130 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.86□□□□□ -2.11
SHMT2P34897 NDUFA8P1-201ENST00000605525 367 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 AC009318.2-201ENST00000610917 651 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 MIR5739-201ENST00000619803 80 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 AC098657.3-201ENST00000620434 263 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 MIR3974-201ENST00000637126 96 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SHMT2P34897 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
SHMT2P34897 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
SHMT2P34897 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SHMT2P34897 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.85□□□□□ -2.11
SHMT2P34897 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
SHMT2P34897 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
SHMT2P34897 RNU6-78P-201ENST00000362897 107 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 RNU6-1287P-201ENST00000362914 107 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 RNU6-715P-201ENST00000365204 103 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 RNU4-48P-201ENST00000365559 182 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 SNORA75-201ENST00000384158 137 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 RNU6-45P-201ENST00000384471 107 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 RNU6-456P-201ENST00000384493 107 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 RNU6-1060P-201ENST00000384664 107 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 MIR186-201ENST00000384988 86 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 RAP1BP3-201ENST00000407180 549 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.85□□□□□ -2.11
SHMT2P34897 AC138623.1-201ENST00000418060 216 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AC090960.1-201ENST00000421072 306 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.85□□□□□ -2.11
SHMT2P34897 HMGB1P31-201ENST00000437242 427 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.85□□□□□ -2.11
SHMT2P34897 AC124916.1-201ENST00000444020 547 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AC098826.2-201ENST00000452011 651 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.85□□□□□ -2.11
SHMT2P34897 ARL2BPP4-201ENST00000506854 471 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AC010486.3-201ENST00000511602 785 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 SNORA48.11-201ENST00000517015 89 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 RNA5SP503-201ENST00000517047 117 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.85□□□□□ -2.11
SHMT2P34897 AP002963.1-201ENST00000530590 184 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 BNIP3P6-201ENST00000549284 499 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AC093249.1-201ENST00000567049 203 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 MIR4703-201ENST00000577728 79 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AL355297.2-201ENST00000604792 129 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AC087752.4-201ENST00000605911 462 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 AC026585.1-201ENST00000619582 524 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 RMST_7.1-201ENST00000621935 268 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 Z69908.1-201ENST00000622603 247 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 SEPT14P19-203ENST00000633205 211 ntBASIC1.85□□□□□ -2.11
SHMT2P34897 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SHMT2P34897 Y_RNA.40-201ENST00000362645 93 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 RNA5SP240-201ENST00000365355 128 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 RNU6-1032P-201ENST00000384100 107 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 MIR583-201ENST00000384846 75 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AL591034.2-201ENST00000402839 359 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 RNU4-46P-201ENST00000410818 138 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.84□□□□□ -2.11
SHMT2P34897 MTCO2P34-201ENST00000421994 607 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.84□□□□□ -2.11
SHMT2P34897 MTCO2P11-201ENST00000431069 680 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AL365400.1-201ENST00000431854 640 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AL358934.1-201ENST00000432346 324 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 MTND4P32-201ENST00000437189 1237 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC016691.1-201ENST00000441321 413 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AL161788.1-201ENST00000441805 169 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.84□□□□□ -2.11
SHMT2P34897 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.84□□□□□ -2.11
SHMT2P34897 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.84□□□□□ -2.11
SHMT2P34897 CYP2C59P-201ENST00000457790 269 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC022364.2-201ENST00000457963 554 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.84□□□□□ -2.11
SHMT2P34897 MTCO2P4-201ENST00000517968 247 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC109329.1-201ENST00000518744 317 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.84□□□□□ -2.11
SHMT2P34897 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SHMT2P34897 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.84□□□□□ -2.11
SHMT2P34897 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.84□□□□□ -2.11
SHMT2P34897 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 MIR4528-201ENST00000577763 90 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC008749.1-201ENST00000597650 306 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC110760.3-201ENST00000598794 467 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 RPL30P11-203ENST00000598995 310 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 SNRPGP19-201ENST00000603826 189 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AL627230.6-201ENST00000611129 280 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC009161.2-201ENST00000624626 138 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 AC002543.1-201ENST00000299783 1954 ntBASIC1.84□□□□□ -2.11
SHMT2P34897 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
SHMT2P34897 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
SHMT2P34897 RNU1-23P-201ENST00000363361 144 ntBASIC1.83□□□□□ -2.12
SHMT2P34897 RNU6-1303P-201ENST00000364841 107 ntBASIC1.83□□□□□ -2.12
SHMT2P34897 RNU2-23P-201ENST00000410545 195 ntBASIC1.83□□□□□ -2.12
SHMT2P34897 OR9R1P-201ENST00000412200 877 ntBASIC1.83□□□□□ -2.12
SHMT2P34897 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.83□□□□□ -2.12
SHMT2P34897 AC074117.2-201ENST00000417130 397 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms