Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-1146P-201ENST00000516282 102 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 RN7SKP234-201ENST00000517173 224 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL8A1P27658 MIR5699-201ENST00000578903 90 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 AC131055.1-201ENST00000584626 316 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.11□□□□□ -1.75
COL8A1P27658 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.11□□□□□ -1.75
COL8A1P27658 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.11□□□□□ -1.75
COL8A1P27658 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL8A1P27658 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL8A1P27658 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.11□□□□□ -1.75
COL8A1P27658 AL450326.2-201ENST00000421913 1962 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL8A1P27658 MAPK10-320ENST00000641462 6696 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.1□□□□□ -1.75
COL8A1P27658 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL8A1P27658 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.1□□□□□ -1.75
COL8A1P27658 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.1□□□□□ -1.75
COL8A1P27658 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
COL8A1P27658 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
COL8A1P27658 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL8A1P27658 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL8A1P27658 Y_RNA.85-201ENST00000363014 111 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 RNU6-727P-201ENST00000363592 107 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 MIR488-201ENST00000365739 83 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL8A1P27658 SNORA51.10-201ENST00000384418 136 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 RNU6-813P-201ENST00000384691 107 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 AC012306.1-201ENST00000423267 114 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 AL450023.3-201ENST00000440592 271 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.1□□□□□ -1.75
COL8A1P27658 AL691482.1-201ENST00000453255 87 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 PARP4P3-201ENST00000510265 317 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 Y_RNA.690-201ENST00000516603 95 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 CYCSP39-201ENST00000565821 309 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 AL031274.2-201ENST00000599419 203 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 AC069200.1-201ENST00000609511 323 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 AC009831.4-201ENST00000620744 325 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL8A1P27658 PHKBP1-201ENST00000450951 1951 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL8A1P27658 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.1□□□□□ -1.75
COL8A1P27658 OR14L1P-202ENST00000641545 3009 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 TLK1P1-201ENST00000456760 2440 ntBASIC4.1□□□□□ -1.75
COL8A1P27658 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL8A1P27658 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.1□□□□□ -1.75
COL8A1P27658 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.09□□□□□ -1.75
COL8A1P27658 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
COL8A1P27658 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL8A1P27658 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL8A1P27658 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL8A1P27658 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL8A1P27658 RNU6-799P-201ENST00000363567 107 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 Y_RNA.544-201ENST00000384650 113 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 MIR659-201ENST00000384963 97 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AL645608.4-201ENST00000423619 154 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AC007919.1-201ENST00000429380 217 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AL356867.1-201ENST00000429623 299 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AC009237.8-201ENST00000445492 379 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC4.09□□□□□ -1.75
COL8A1P27658 RNU6ATAC17P-201ENST00000516074 71 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 RNU6-1256P-201ENST00000516539 103 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.09□□□□□ -1.75
COL8A1P27658 AP003730.1-201ENST00000524605 285 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.09□□□□□ -1.75
COL8A1P27658 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.09□□□□□ -1.75
COL8A1P27658 PRELID2P1-201ENST00000552837 301 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AL121603.1-201ENST00000553815 142 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 CYP4A27P-201ENST00000567218 190 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AC233702.9-201ENST00000581528 203 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 MIR4298-201ENST00000584380 73 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AC012468.1-201ENST00000604888 430 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AC019159.1-201ENST00000605094 187 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AL121932.1-201ENST00000605542 214 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 AC134878.1-201ENST00000619901 243 ntBASIC4.09□□□□□ -1.75
COL8A1P27658 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
COL8A1P27658 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
COL8A1P27658 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.09□□□□□ -1.75
COL8A1P27658 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL8A1P27658 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL8A1P27658 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL8A1P27658 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL8A1P27658 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC4.09□□□□□ -1.76
COL8A1P27658 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.09□□□□□ -1.76
COL8A1P27658 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.08□□□□□ -1.76
COL8A1P27658 SCN1A-220ENST00000641603 12506 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL8A1P27658 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
COL8A1P27658 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL8A1P27658 SNORD56.1-201ENST00000362913 68 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 RNU6-173P-201ENST00000364215 104 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 Y_RNA.220-201ENST00000364244 109 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 SNORA71.2-201ENST00000364941 134 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 SNORA18.3-201ENST00000384122 132 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 SNORA26.3-201ENST00000391119 136 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL8A1P27658 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.08□□□□□ -1.76
COL8A1P27658 PPIAP31-201ENST00000405422 495 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 MIR320B2-201ENST00000408479 138 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms