Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AP000797.1-201ENST00000478870 387 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 AL160314.1-201ENST00000490836 438 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.3□□□□□ -2.2
COL5A3P25940 AC093852.1-201ENST00000503587 266 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.3□□□□□ -2.2
COL5A3P25940 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.3□□□□□ -2.2
COL5A3P25940 SNORA31.16-201ENST00000516773 139 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.3□□□□□ -2.2
COL5A3P25940 NACAP3-201ENST00000552100 481 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.3□□□□□ -2.2
COL5A3P25940 MIR4293-201ENST00000584305 78 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 MIR4295-201ENST00000585286 85 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 AL022161.1-201ENST00000604390 213 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 AC091965.4-201ENST00000607691 587 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.3□□□□□ -2.2
COL5A3P25940 HMGB1P24-202ENST00000615653 685 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.3□□□□□ -2.2
COL5A3P25940 Z69908.1-201ENST00000622603 247 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.3□□□□□ -2.2
COL5A3P25940 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
COL5A3P25940 AC007785.2-201ENST00000598627 1916 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 RNU5F-6P-201ENST00000362979 116 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 RNU6-1284P-201ENST00000363701 100 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.29□□□□□ -2.2
COL5A3P25940 RNU6-809P-201ENST00000384461 107 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 CISD1P1-201ENST00000393907 327 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 Y_RNA.608-201ENST00000410647 95 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AC127391.1-201ENST00000411737 98 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 RPS20P15-201ENST00000412792 311 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AC114491.1-201ENST00000416095 246 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 RAC1P6-201ENST00000423911 575 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.29□□□□□ -2.2
COL5A3P25940 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
COL5A3P25940 RPS27AP8-201ENST00000452665 445 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC1.29□□□□□ -2.2
COL5A3P25940 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.29□□□□□ -2.2
COL5A3P25940 AC005178.1-201ENST00000508392 440 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC1.29□□□□□ -2.2
COL5A3P25940 RNU5F-8P-201ENST00000515941 111 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 Y_RNA.689-201ENST00000516589 107 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AP005597.4-201ENST00000526762 229 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AP003122.4-201ENST00000530980 758 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.29□□□□□ -2.2
COL5A3P25940 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.29□□□□□ -2.2
COL5A3P25940 HMGN1P30-201ENST00000589286 268 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AL133173.2-201ENST00000614270 90 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AC104010.1-201ENST00000616889 150 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 MIR7515-201ENST00000637837 67 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 RNU4-1-201ENST00000363925 141 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 SNORA23-201ENST00000365128 182 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 MIR1-2-201ENST00000384961 85 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 RNU2-39P-201ENST00000410604 198 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AL451054.2-201ENST00000420896 202 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.29□□□□□ -2.2
COL5A3P25940 TRIM60P10Y-201ENST00000425589 751 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 ZNF863P-201ENST00000426746 417 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 HMGB1P9-201ENST00000429856 646 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.29□□□□□ -2.2
COL5A3P25940 MTND6P13-201ENST00000443510 523 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 MTND2P22-201ENST00000444325 1033 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.29□□□□□ -2.2
COL5A3P25940 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.29□□□□□ -2.2
COL5A3P25940 AC093899.1-201ENST00000457984 376 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 RNA5SP269-201ENST00000459032 137 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 snoU109.1-201ENST00000459339 135 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AL049874.1-201ENST00000489560 388 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.29□□□□□ -2.2
COL5A3P25940 AC091965.2-201ENST00000512324 613 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC1.29□□□□□ -2.2
COL5A3P25940 RNU6-64P-201ENST00000517119 105 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AC022880.1-201ENST00000534017 973 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC1.29□□□□□ -2.2
COL5A3P25940 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.29□□□□□ -2.2
COL5A3P25940 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.29□□□□□ -2.2
COL5A3P25940 AC005951.2-201ENST00000576282 495 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 MIR548AB-201ENST00000584917 84 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AF038458.1-201ENST00000588406 262 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AC008749.1-201ENST00000597650 306 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AL109918.3-201ENST00000603072 338 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AC174048.1-201ENST00000603389 144 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AC112191.3-201ENST00000604371 277 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 SNORD114-21-201ENST00000606412 72 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 AC025594.3-201ENST00000613068 790 ntBASIC1.29□□□□□ -2.2
COL5A3P25940 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.29□□□□□ -2.2
COL5A3P25940 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.29□□□□□ -2.2
COL5A3P25940 TEX21P-201ENST00000447107 1476 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AL137003.2-201ENST00000606924 2538 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
COL5A3P25940 RNU1-62P-201ENST00000362599 164 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 Y_RNA.115-201ENST00000363272 98 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 U8.3-201ENST00000363321 132 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 SNORA3A-201ENST00000364113 130 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 RNU4-42P-201ENST00000364738 142 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 SMIM11P1-201ENST00000369586 178 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.28□□□□□ -2.2
COL5A3P25940 RNY3P10-201ENST00000384764 102 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AL139397.2-201ENST00000404529 772 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 BX295541.1-201ENST00000417774 250 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 PIGFP2-201ENST00000421400 651 ntBASIC1.28□□□□□ -2.2
COL5A3P25940 AC007283.2-201ENST00000424739 197 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms