Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.02□□□□□ -2.09
SDC1P18827 SNORA25.17-201ENST00000517184 124 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AP003034.1-201ENST00000534621 422 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AC103987.3-201ENST00000582071 292 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-6P-201ENST00000606623 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AC002044.1-201ENST00000606707 158 ntBASIC2.02□□□□□ -2.09
SDC1P18827 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AL158209.2-201ENST00000619266 216 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.02□□□□□ -2.09
SDC1P18827 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SDC1P18827 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.01□□□□□ -2.09
SDC1P18827 SNORD56.1-201ENST00000362913 68 ntBASIC2.01□□□□□ -2.09
SDC1P18827 Y_RNA.255-201ENST00000364581 97 ntBASIC2.01□□□□□ -2.09
SDC1P18827 RNA5SP160-201ENST00000364866 120 ntBASIC2.01□□□□□ -2.09
SDC1P18827 XGY1-201ENST00000381172 446 ntBASIC2.01□□□□□ -2.09
SDC1P18827 Y_RNA.399-201ENST00000383955 105 ntBASIC2.01□□□□□ -2.09
SDC1P18827 RNU6-301P-201ENST00000384277 107 ntBASIC2.01□□□□□ -2.09
SDC1P18827 RNU1-57P-201ENST00000384491 166 ntBASIC2.01□□□□□ -2.09
SDC1P18827 MIR524-201ENST00000385242 87 ntBASIC2.01□□□□□ -2.09
SDC1P18827 RNA5SP338-201ENST00000410495 85 ntBASIC2.01□□□□□ -2.09
SDC1P18827 RNU4-53P-201ENST00000410828 140 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 AC025033.1-201ENST00000463883 194 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AC090255.1-201ENST00000495779 349 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 CCDC34P1-201ENST00000507441 517 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 AF213884.2-201ENST00000510417 903 ntBASIC2.01□□□□□ -2.09
SDC1P18827 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.01□□□□□ -2.09
SDC1P18827 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.01□□□□□ -2.09
SDC1P18827 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 AC104383.1-201ENST00000530297 370 ntBASIC2.01□□□□□ -2.09
SDC1P18827 SNRPGP18-201ENST00000553000 214 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.01□□□□□ -2.09
SDC1P18827 MIR4672-201ENST00000583126 81 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AC073410.2-201ENST00000603240 332 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AL713866.2-201ENST00000603579 219 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AL138963.2-201ENST00000605137 226 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AC245884.12-201ENST00000615364 59 ntBASIC2.01□□□□□ -2.09
SDC1P18827 SCARNA15.3-201ENST00000626315 122 ntBASIC2.01□□□□□ -2.09
SDC1P18827 SCARNA4.1-201ENST00000628597 123 ntBASIC2.01□□□□□ -2.09
SDC1P18827 U4.7-201ENST00000638126 106 ntBASIC2.01□□□□□ -2.09
SDC1P18827 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.01□□□□□ -2.09
SDC1P18827 AP000553.5-201ENST00000641933 54 ntBASIC2.01□□□□□ -2.09
SDC1P18827 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
SDC1P18827 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2□□□□□ -2.09
SDC1P18827 MTND4P14-201ENST00000435799 1354 ntBASIC2□□□□□ -2.09
SDC1P18827 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SDC1P18827 Y_RNA.40-201ENST00000362645 93 ntBASIC2□□□□□ -2.09
SDC1P18827 RNU6-529P-201ENST00000363383 104 ntBASIC2□□□□□ -2.09
SDC1P18827 RNU6-266P-201ENST00000364225 107 ntBASIC2□□□□□ -2.09
SDC1P18827 RNU1-91P-201ENST00000364746 163 ntBASIC2□□□□□ -2.09
SDC1P18827 Y_RNA.480-201ENST00000384364 102 ntBASIC2□□□□□ -2.09
SDC1P18827 Y_RNA.510-201ENST00000384511 114 ntBASIC2□□□□□ -2.09
SDC1P18827 MIR186-201ENST00000384988 86 ntBASIC2□□□□□ -2.09
SDC1P18827 MIR23A-201ENST00000385245 73 ntBASIC2□□□□□ -2.09
SDC1P18827 CALM2P3-201ENST00000400429 449 ntBASIC2□□□□□ -2.09
SDC1P18827 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2□□□□□ -2.09
SDC1P18827 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2□□□□□ -2.09
SDC1P18827 RPL7P54-201ENST00000438336 674 ntBASIC2□□□□□ -2.09
SDC1P18827 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2□□□□□ -2.09
SDC1P18827 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2□□□□□ -2.09
SDC1P18827 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2□□□□□ -2.09
SDC1P18827 AC107401.1-201ENST00000503426 685 ntBASIC2□□□□□ -2.09
SDC1P18827 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2□□□□□ -2.09
SDC1P18827 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2□□□□□ -2.09
SDC1P18827 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2□□□□□ -2.09
SDC1P18827 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2□□□□□ -2.09
SDC1P18827 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2□□□□□ -2.09
SDC1P18827 AC023050.3-201ENST00000541142 333 ntBASIC2□□□□□ -2.09
SDC1P18827 AL133241.1-201ENST00000556832 487 ntBASIC2□□□□□ -2.09
SDC1P18827 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2□□□□□ -2.09
SDC1P18827 MIR4424-201ENST00000585257 86 ntBASIC2□□□□□ -2.09
SDC1P18827 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2□□□□□ -2.09
SDC1P18827 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2□□□□□ -2.09
SDC1P18827 uc_338.34-201ENST00000617467 174 ntBASIC2□□□□□ -2.09
SDC1P18827 AC097372.5-201ENST00000623665 376 ntBASIC2□□□□□ -2.09
SDC1P18827 AC124864.2-201ENST00000624736 186 ntBASIC2□□□□□ -2.09
SDC1P18827 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2□□□□□ -2.09
SDC1P18827 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.99□□□□□ -2.09
SDC1P18827 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SDC1P18827 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SDC1P18827 SNORA38-201ENST00000363946 132 ntBASIC1.99□□□□□ -2.09
SDC1P18827 Y_RNA.318-201ENST00000365131 97 ntBASIC1.99□□□□□ -2.09
SDC1P18827 MTCO3P40-201ENST00000392516 676 ntBASIC1.99□□□□□ -2.09
SDC1P18827 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SDC1P18827 AL606923.1-201ENST00000406616 190 ntBASIC1.99□□□□□ -2.09
SDC1P18827 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.99□□□□□ -2.09
SDC1P18827 SNORD56-201ENST00000413522 71 ntBASIC1.99□□□□□ -2.09
SDC1P18827 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.99□□□□□ -2.09
SDC1P18827 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms