Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC0.11□□□□□ -2.39
SPTA1P02549 NDUFA8P1-201ENST00000605525 367 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 AC117490.2-201ENST00000610042 594 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 MTND4P16-201ENST00000466108 1367 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 MIR518D-201ENST00000385014 87 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC0.11□□□□□ -2.39
SPTA1P02549 UBE2V1P8-201ENST00000437166 265 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 MTCO3P2-201ENST00000457365 171 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 AC002350.1-201ENST00000490759 375 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 RN7SKP88-201ENST00000516847 250 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 AC018659.1-201ENST00000551083 169 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 SNORA77B-201ENST00000578179 125 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.11□□□□□ -2.39
SPTA1P02549 AC093788.1-201ENST00000609356 927 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 AC092106.3-201ENST00000611308 722 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 7SK.8-201ENST00000612110 250 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 7SK.11-201ENST00000615477 250 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 7SK.13-201ENST00000622040 250 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 AC130454.1-201ENST00000622948 401 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 AC017104.5-201ENST00000637647 639 ntBASIC0.11□□□□□ -2.39
SPTA1P02549 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC0.11□□□□□ -2.39
SPTA1P02549 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.11□□□□□ -2.39
SPTA1P02549 SNORD44.1-201ENST00000363202 61 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 DHFRP6-201ENST00000401776 268 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 RNA5SP118-201ENST00000410385 109 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 RNA5SP100-201ENST00000410903 110 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 RNA5SP59-201ENST00000410922 110 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.1□□□□□ -2.39
SPTA1P02549 BTF3P8-201ENST00000414577 526 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC0.1□□□□□ -2.39
SPTA1P02549 AL121578.1-201ENST00000428051 892 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC0.1□□□□□ -2.39
SPTA1P02549 AC007919.1-201ENST00000429380 217 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC0.1□□□□□ -2.39
SPTA1P02549 RAP1BP2-201ENST00000478270 544 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AL049874.1-201ENST00000489560 388 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.1□□□□□ -2.39
SPTA1P02549 SNORA31.17-201ENST00000516953 127 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC0.1□□□□□ -2.39
SPTA1P02549 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.1□□□□□ -2.39
SPTA1P02549 AC069114.2-201ENST00000604699 304 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AC092953.2-201ENST00000608000 699 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AC073349.3-201ENST00000617616 186 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AC123767.1-202ENST00000620407 817 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 AC009950.2-201ENST00000636548 183 ntBASIC0.1□□□□□ -2.39
SPTA1P02549 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC0.09□□□□□ -2.39
SPTA1P02549 snoU2_19.1-201ENST00000362361 80 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 RNU6-349P-201ENST00000362402 107 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 SNORD114-16-201ENST00000363044 70 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 AL109755.1-201ENST00000401791 649 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 AL121978.1-201ENST00000402778 359 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 TAF13P2-201ENST00000416876 286 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.09□□□□□ -2.39
SPTA1P02549 AL392003.1-201ENST00000434394 243 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 HSPE1P9-201ENST00000440046 311 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 AL353752.1-201ENST00000454946 260 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC0.09□□□□□ -2.39
SPTA1P02549 HMGN1P13-201ENST00000505795 138 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 ACA59.2-201ENST00000517061 156 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC0.09□□□□□ -2.39
SPTA1P02549 AC090578.1-201ENST00000604955 591 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 AL355802.4-201ENST00000607635 548 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.09□□□□□ -2.39
SPTA1P02549 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.09□□□□□ -2.39
SPTA1P02549 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.09□□□□□ -2.39
SPTA1P02549 RNU4-9P-201ENST00000364951 139 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 Y_RNA.514-201ENST00000384528 112 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 MIR200A-201ENST00000384875 90 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.09□□□□□ -2.4
SPTA1P02549 TRIM60P5Y-201ENST00000413946 574 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 RAB11AP1-201ENST00000442978 646 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 ANKRD26P2-201ENST00000445530 1710 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 HMGN3P1-201ENST00000453847 193 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.09□□□□□ -2.4
SPTA1P02549 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.09□□□□□ -2.4
SPTA1P02549 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.09□□□□□ -2.4
SPTA1P02549 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC0.09□□□□□ -2.4
SPTA1P02549 HMGB1P33-201ENST00000563485 527 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 BNIP3P31-201ENST00000604515 566 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 LARP7P1-201ENST00000605576 316 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 AC016542.1-201ENST00000608259 493 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 MIR371B-201ENST00000638082 66 ntBASIC0.09□□□□□ -2.4
SPTA1P02549 RNU5E-1-201ENST00000362477 120 ntBASIC0.08□□□□□ -2.4
SPTA1P02549 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.08□□□□□ -2.4
SPTA1P02549 RNY3P5-201ENST00000384127 102 ntBASIC0.08□□□□□ -2.4
SPTA1P02549 RNU6-1222P-201ENST00000384615 107 ntBASIC0.08□□□□□ -2.4
SPTA1P02549 MIR135A2-201ENST00000384854 100 ntBASIC0.08□□□□□ -2.4
SPTA1P02549 RNU6-750P-201ENST00000390946 107 ntBASIC0.08□□□□□ -2.4
SPTA1P02549 RNU2-33P-201ENST00000410344 192 ntBASIC0.08□□□□□ -2.4
SPTA1P02549 PNRC2P1-201ENST00000423940 420 ntBASIC0.08□□□□□ -2.4
SPTA1P02549 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC0.08□□□□□ -2.4
SPTA1P02549 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC0.08□□□□□ -2.4
SPTA1P02549 RPS26P45-201ENST00000471748 340 ntBASIC0.08□□□□□ -2.4
SPTA1P02549 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.08□□□□□ -2.4
SPTA1P02549 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC0.08□□□□□ -2.4
SPTA1P02549 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC0.08□□□□□ -2.4
SPTA1P02549 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms