Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC018630.3-201ENST00000542637 96 ntBASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 VN1R80P-201ENST00000597126 338 ntBASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 AL158032.1-201ENST00000605401 106 ntBASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 AC144521.1-201ENST00000607148 956 ntBASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 U6.42-201ENST00000618440 107 ntBASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
USH1CQ9Y6N9 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 SNORD14B-201ENST00000364533 90 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 SNORA48.1-201ENST00000390879 135 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 RNA5SP390-201ENST00000410191 113 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AL365400.1-201ENST00000431854 640 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 snoU13.14-201ENST00000459372 104 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AL163540.1-201ENST00000485382 386 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 MTCYBP40-201ENST00000509390 1135 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 RNVU1-2-201ENST00000516326 135 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 Y_RNA.687-201ENST00000516558 91 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AC107934.1-201ENST00000522215 217 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AP003122.4-201ENST00000530980 758 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AL138889.2-201ENST00000603883 242 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AC010900.2-201ENST00000604508 210 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AP001485.1-201ENST00000604799 199 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AL050343.2-201ENST00000607338 280 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AC063943.3-201ENST00000615562 356 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AC007792.1-201ENST00000623023 402 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 AC103706.2-201ENST00000638080 240 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 ZNF680P1-201ENST00000436625 1469 ntBASIC1.3□□□□□ -2.2
USH1CQ9Y6N9 CBX3P1-201ENST00000325243 554 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 Y_RNA.99-201ENST00000363138 105 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 RNU6-23P-201ENST00000363283 107 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 RNU6-439P-201ENST00000384188 106 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 RNU6-1242P-201ENST00000391052 103 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 RNU4-62P-201ENST00000410125 130 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 Y_RNA.597-201ENST00000410463 100 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 RNA5SP100-201ENST00000410903 110 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 RNA5SP59-201ENST00000410922 110 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AL353777.1-201ENST00000425552 326 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 RPS29P29-201ENST00000456396 171 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 USP9YP25-201ENST00000457708 443 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 RPL30P12-201ENST00000474666 353 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC114801.2-201ENST00000503825 781 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 RNU6-1003P-201ENST00000517099 105 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC011979.2-201ENST00000527568 352 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 SUB1P3-201ENST00000564581 315 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC103987.3-201ENST00000582071 292 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 DEFB131E-202ENST00000602581 683 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AL645939.4-201ENST00000604495 135 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC121334.2-201ENST00000605387 271 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AL359547.2-201ENST00000615810 418 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 SCARNA4-202ENST00000625402 129 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 MIR1248-201ENST00000629190 106 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 AL445523.1-201ENST00000451184 1362 ntBASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
USH1CQ9Y6N9 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 OR4G2P-201ENST00000328113 903 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 Y_RNA.67-201ENST00000362870 100 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 SNORD56.1-201ENST00000362913 68 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 RNU6-636P-201ENST00000384598 107 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 RPS3AP36-201ENST00000398190 775 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 RNU6-174P-201ENST00000410406 106 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 AP1B1P2-201ENST00000416196 106 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 RPS15AP12-201ENST00000419498 388 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 EXOSC3P1-201ENST00000448649 500 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 NDUFB1P2-201ENST00000449477 176 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 AC006026.2-201ENST00000457376 180 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 AC005908.1-201ENST00000468701 347 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 RPL31P58-201ENST00000469001 379 ntBASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.28□□□□□ -2.2
USH1CQ9Y6N9 SNORA43.2-201ENST00000516652 128 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms