Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 RNU6-622P-201ENST00000384272 103 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 RNA5SP390-201ENST00000410191 113 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 RNU6-1140P-201ENST00000410517 106 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AF274854.1-201ENST00000413236 615 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AL669831.1-202ENST00000428504 417 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AC073464.1-201ENST00000429823 534 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 GTF2IP13-201ENST00000438487 386 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AP001025.1-201ENST00000486139 332 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AC105417.1-201ENST00000514691 285 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 LRRC34P2-201ENST00000514850 553 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 SNORA31.23-201ENST00000517219 133 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 MIR4648-201ENST00000580107 72 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 NBR2-204ENST00000587322 63 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 AC008752.3-201ENST00000588113 712 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 uc_338.15-201ENST00000615470 191 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 ZNF720P1-201ENST00000562403 1939 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 Y_RNA.324-201ENST00000365165 102 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 Y_RNA.381-201ENST00000365666 102 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 RNU5A-6P-201ENST00000384136 116 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 RNU6-393P-201ENST00000384475 107 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 MIR186-201ENST00000384988 86 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL079342.1-201ENST00000401460 267 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 GSTA9P-201ENST00000406231 611 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 RNU2-29P-201ENST00000410423 189 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 RN7SKP158-201ENST00000410453 326 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 OR9R1P-201ENST00000412200 877 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 OOSP1P1-201ENST00000423265 274 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 CR769767.1-201ENST00000436337 346 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AC124916.1-201ENST00000444020 547 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 MTND1P29-201ENST00000448112 647 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL356010.1-201ENST00000456364 102 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 MTCO3P9-201ENST00000506989 781 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 MIR4298-201ENST00000584380 73 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 RPL30P11-203ENST00000598995 310 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL713866.2-201ENST00000603579 219 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL391646.1-201ENST00000603860 190 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AC007684.1-201ENST00000609671 477 ntBASIC2.13□□□□□ -2.07
LHX3Q9UBR4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.13□□□□□ -2.07
LHX3Q9UBR4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.12□□□□□ -2.07
LHX3Q9UBR4 MIRLET7G-201ENST00000362280 84 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 RNU6-78P-201ENST00000362897 107 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 SNORD56.1-201ENST00000362913 68 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 RNU6-1303P-201ENST00000364841 107 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 RNU5E-7P-201ENST00000365290 117 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AL139156.1-201ENST00000412785 841 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.12□□□□□ -2.07
LHX3Q9UBR4 BTF3L4P1-201ENST00000413813 468 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC008267.5-201ENST00000424928 265 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 USP9YP14-201ENST00000430663 563 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC002486.1-201ENST00000435098 391 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
LHX3Q9UBR4 RNU2-53P-201ENST00000516257 147 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AP003392.2-201ENST00000527269 208 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC090897.2-201ENST00000581715 130 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AL049779.4-201ENST00000604500 156 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 SNORD14A-201ENST00000606526 91 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC087241.4-201ENST00000612441 480 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC008121.3-201ENST00000618726 433 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 Z69720.2-201ENST00000624755 279 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC005609.4-201ENST00000625071 447 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 MIR219B-201ENST00000637023 88 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 AC092881.1-201ENST00000638218 2733 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 Z82209.1-201ENST00000422141 2135 ntBASIC2.12□□□□□ -2.07
LHX3Q9UBR4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 RNU6-1103P-201ENST00000384150 107 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 RNU6-434P-201ENST00000384376 107 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 MIR95-201ENST00000385072 81 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 MIR524-201ENST00000385242 87 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 SNORD70.1-201ENST00000391007 85 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms