Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNU6-45P-201ENST00000384471 107 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AL355497.1-201ENST00000406262 551 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 RNU2-20P-201ENST00000410425 191 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 RNU6-1140P-201ENST00000410517 106 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 MTND2P22-201ENST00000444325 1033 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 MTND1P18-201ENST00000448191 573 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 TPT1P7-201ENST00000458300 517 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AC140059.1-201ENST00000489238 361 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 HMGB1P30-201ENST00000492455 606 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 BNIP3P6-201ENST00000549284 499 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AL133241.1-201ENST00000556832 487 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AC073648.5-201ENST00000603502 305 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AC008945.2-201ENST00000606056 604 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 RNU6-91P-201ENST00000607774 107 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 AC087241.4-201ENST00000612441 480 ntBASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
VPS54Q9P1Q0 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 CYCSP33-201ENST00000414485 327 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 IPO7P1-201ENST00000442031 636 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AC018437.1-201ENST00000492214 406 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 MTCO3P9-201ENST00000506989 781 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AC008526.1-201ENST00000509149 338 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AF213884.2-201ENST00000510417 903 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AC104136.1-201ENST00000512969 394 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 RN7SKP298-201ENST00000515950 94 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AP004607.1-201ENST00000524456 203 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 MIR4703-201ENST00000577728 79 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AL138963.2-201ENST00000605137 226 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 AC009233.1-201ENST00000616477 371 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 ZNF680P1-201ENST00000436625 1469 ntBASIC2.24□□□□□ -2.05
VPS54Q9P1Q0 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 OR56A5-201ENST00000340110 738 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 RNU6-1303P-201ENST00000364841 107 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 RNU6-843P-201ENST00000384454 104 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 SNORD116-20-201ENST00000384529 92 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC068050.1-201ENST00000394891 380 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 RNU2-3P-201ENST00000410144 191 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 RNU6-607P-201ENST00000411283 108 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 UBE2V1P10-201ENST00000414685 269 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC138623.1-201ENST00000418060 216 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 OOSP1P1-201ENST00000423265 274 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AL669831.1-202ENST00000428504 417 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 GTF2IP13-201ENST00000438487 386 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC012308.1-201ENST00000451232 178 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 RPS3AP17-201ENST00000472594 777 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC079804.2-201ENST00000490376 200 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC074344.1-201ENST00000512823 224 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 HSPE1P18-201ENST00000517602 280 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 FAM92A1P1-201ENST00000528023 890 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 CR383656.8-201ENST00000549046 145 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 MTND1P15-201ENST00000579262 949 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 PIGPP4-201ENST00000584447 307 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 MIR3611-201ENST00000584484 83 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC008752.3-201ENST00000588113 712 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 BNIP3P30-201ENST00000601184 574 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC008536.2-201ENST00000607284 349 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC093788.1-201ENST00000609356 927 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 AC026585.1-201ENST00000619582 524 ntBASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS54Q9P1Q0 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 Y_RNA.51-201ENST00000362725 102 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 RNU1-72P-201ENST00000362976 153 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 RNU6-1120P-201ENST00000362988 108 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 RNU6-606P-201ENST00000384721 111 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 SNORD23.1-201ENST00000408212 104 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 MTATP6P18-201ENST00000417994 673 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 HMGB1P31-201ENST00000437242 427 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms