Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC022418.1-201ENST00000624118 445 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 Z69720.2-201ENST00000624755 279 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 MTND4P14-201ENST00000435799 1354 ntBASIC2.21□□□□□ -2.06
DDX28Q9NUL7 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
DDX28Q9NUL7 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
DDX28Q9NUL7 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
DDX28Q9NUL7 Y_RNA.1-201ENST00000352915 104 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 RNU1-72P-201ENST00000362976 153 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 RNA5SP68-201ENST00000363885 119 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 RNU5E-7P-201ENST00000365290 117 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 RNA5SP240-201ENST00000365355 128 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 SNORA70B-201ENST00000384210 135 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 Y_RNA.480-201ENST00000384364 102 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 RNU1-57P-201ENST00000384491 166 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AL663109.1-201ENST00000411498 844 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AL451074.3-201ENST00000437709 472 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 CYP2C59P-201ENST00000457790 269 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 RNU7-63P-201ENST00000459054 62 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AC140059.1-201ENST00000489238 361 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 YWHAEP4-201ENST00000505390 198 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 MTCYBP40-201ENST00000509390 1135 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.2□□□□□ -2.06
DDX28Q9NUL7 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AGGF1P4-201ENST00000568249 801 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 MTATP6P3-201ENST00000581686 676 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AC087683.1-201ENST00000591187 441 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AC073410.2-201ENST00000603240 332 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 NDUFA8P1-201ENST00000605525 367 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AC087241.4-201ENST00000612441 480 ntBASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.2□□□□□ -2.06
DDX28Q9NUL7 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.2□□□□□ -2.06
DDX28Q9NUL7 RNU6-78P-201ENST00000362897 107 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 SNORA16B-201ENST00000364674 135 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 SNORA51.11-201ENST00000384442 131 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AL356379.1-201ENST00000414105 126 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 PRPS1P1-201ENST00000445305 876 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 CKS1BP2-201ENST00000497342 240 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 RNU2-69P-201ENST00000516061 100 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AP003392.2-201ENST00000527269 208 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AL137161.1-201ENST00000532231 390 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 MTCO3P23-201ENST00000561363 289 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 MTND1P15-201ENST00000579262 949 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AC090897.2-201ENST00000581715 130 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 MIR3941-201ENST00000582572 103 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AC091805.2-201ENST00000603848 235 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 uc_338.15-201ENST00000615470 191 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 U4atac.1-201ENST00000618345 95 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 AC048344.4-201ENST00000619744 527 ntBASIC2.19□□□□□ -2.06
DDX28Q9NUL7 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.19□□□□□ -2.06
DDX28Q9NUL7 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 RNU6-552P-201ENST00000362869 119 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 RNU6-996P-201ENST00000365438 107 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 RNU4-52P-201ENST00000384209 138 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 MIR27B-201ENST00000385129 97 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 SNORA16.2-201ENST00000390991 127 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AL591416.1-201ENST00000404015 867 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 RNU6-1140P-201ENST00000410517 106 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 RNU4-55P-201ENST00000410731 137 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AL121890.1-201ENST00000435457 205 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AL161788.1-201ENST00000441805 169 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 UBL5P3-201ENST00000475112 231 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AL163973.1-201ENST00000484753 577 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 CBX3P7-201ENST00000532876 502 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AP003034.1-201ENST00000534621 422 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AC009063.1-201ENST00000563342 702 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AC012507.3-201ENST00000603556 477 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 AC017083.3-201ENST00000609955 700 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 Z99129.1-201ENST00000612510 255 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 U4.7-201ENST00000638126 106 ntBASIC2.18□□□□□ -2.06
DDX28Q9NUL7 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.18□□□□□ -2.06
DDX28Q9NUL7 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms