Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.41□□□□□ -2.18
USP42Q9H9J4 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC1.41□□□□□ -2.18
USP42Q9H9J4 AC106858.1-201ENST00000637497 429 ntBASIC1.41□□□□□ -2.18
USP42Q9H9J4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
USP42Q9H9J4 AC091812.1-201ENST00000432235 1948 ntBASIC1.41□□□□□ -2.18
USP42Q9H9J4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.41□□□□□ -2.18
USP42Q9H9J4 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.4□□□□□ -2.18
USP42Q9H9J4 MIR424-201ENST00000362227 98 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 RNA5SP325-201ENST00000363756 130 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 RNU6-611P-201ENST00000384276 104 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 RNU6-166P-201ENST00000384371 107 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 MIR30A-201ENST00000385092 71 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 RN7SKP266-201ENST00000410232 287 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 HMGN1P14-201ENST00000412459 517 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 AL591704.2-201ENST00000421658 181 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC1.4□□□□□ -2.18
USP42Q9H9J4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.4□□□□□ -2.18
USP42Q9H9J4 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.18
USP42Q9H9J4 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.4□□□□□ -2.18
USP42Q9H9J4 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC1.4□□□□□ -2.18
USP42Q9H9J4 snoU109.2-201ENST00000459316 135 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.4□□□□□ -2.18
USP42Q9H9J4 AC010376.1-201ENST00000522101 334 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.4□□□□□ -2.18
USP42Q9H9J4 AC098614.4-201ENST00000607601 462 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC1.4□□□□□ -2.18
USP42Q9H9J4 PART1_2.1-201ENST00000612397 250 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 AC130324.3-201ENST00000614165 542 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 AL138955.1-201ENST00000622881 1040 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 AL138960.2-201ENST00000625145 535 ntBASIC1.4□□□□□ -2.18
USP42Q9H9J4 RNU6-462P-201ENST00000362659 105 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
USP42Q9H9J4 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC1.4□□□□□ -2.19
USP42Q9H9J4 MIR1305-201ENST00000408300 86 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 RNU2-48P-201ENST00000410694 191 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.4□□□□□ -2.19
USP42Q9H9J4 MTND4LP16-201ENST00000440828 295 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.4□□□□□ -2.19
USP42Q9H9J4 SNRPFP3-201ENST00000457792 225 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 AC027575.1-201ENST00000481064 460 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 RPS23P4-201ENST00000487908 423 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 RNA5SP436-201ENST00000516020 115 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 RNA5SP216-201ENST00000516111 123 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 RNU6-1315P-201ENST00000517187 99 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC1.4□□□□□ -2.19
USP42Q9H9J4 AC092325.1-201ENST00000566449 554 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 AC022893.3-201ENST00000607665 437 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 MIR3529-201ENST00000637713 78 ntBASIC1.4□□□□□ -2.19
USP42Q9H9J4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
USP42Q9H9J4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.39□□□□□ -2.19
USP42Q9H9J4 AC092104.1-201ENST00000497346 1441 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 RNU1-58P-201ENST00000362413 163 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 Y_RNA.33-201ENST00000362591 102 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 RNU6-1010P-201ENST00000362757 107 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 RNU6-655P-201ENST00000362858 107 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 RNU6-529P-201ENST00000363383 104 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 RNU6-1000P-201ENST00000391066 106 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 ELOCP17-201ENST00000414751 326 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.39□□□□□ -2.19
USP42Q9H9J4 ELOCP9-201ENST00000418624 239 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.39□□□□□ -2.19
USP42Q9H9J4 AL357134.1-201ENST00000445848 426 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.39□□□□□ -2.19
USP42Q9H9J4 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC1.39□□□□□ -2.19
USP42Q9H9J4 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.39□□□□□ -2.19
USP42Q9H9J4 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
USP42Q9H9J4 RNU6-914P-201ENST00000516749 109 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC1.39□□□□□ -2.19
USP42Q9H9J4 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.39□□□□□ -2.19
USP42Q9H9J4 MTCYBP33-201ENST00000575007 1130 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 MIR3198-2-201ENST00000577868 80 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.39□□□□□ -2.19
USP42Q9H9J4 RNU6-88P-201ENST00000606801 100 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 DLEU1_2.1-201ENST00000617920 342 ntBASIC1.39□□□□□ -2.19
USP42Q9H9J4 Y_RNA.465-201ENST00000384293 102 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
USP42Q9H9J4 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
USP42Q9H9J4 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
USP42Q9H9J4 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC1.38□□□□□ -2.19
USP42Q9H9J4 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.38□□□□□ -2.19
USP42Q9H9J4 MTCO3P46-201ENST00000425787 232 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 TXNL1P1-201ENST00000429528 554 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 TIMM9P1-201ENST00000436122 256 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.38□□□□□ -2.19
USP42Q9H9J4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.38□□□□□ -2.19
USP42Q9H9J4 SNORA31.16-201ENST00000516773 139 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 RNU6-677P-201ENST00000516914 101 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.38□□□□□ -2.19
USP42Q9H9J4 AP004247.1-201ENST00000531556 1289 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.38□□□□□ -2.19
USP42Q9H9J4 AL157871.3-201ENST00000557231 293 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
USP42Q9H9J4 AL050343.2-201ENST00000607338 280 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.38□□□□□ -2.19
USP42Q9H9J4 AL356596.1-201ENST00000624230 379 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 AC091965.5-201ENST00000624785 342 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 MTND5P42-201ENST00000637720 498 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.38□□□□□ -2.19
USP42Q9H9J4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
USP42Q9H9J4 RNU6-212P-201ENST00000362642 104 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms