Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.82
PCIF1Q9H4Z3 AC008725.1-201ENST00000605123 2263 ntBASIC3.65□□□□□ -1.82
PCIF1Q9H4Z3 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.65□□□□□ -1.82
PCIF1Q9H4Z3 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
PCIF1Q9H4Z3 TNPO1P3-201ENST00000436471 2662 ntBASIC3.65□□□□□ -1.82
PCIF1Q9H4Z3 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 Y_RNA.153-201ENST00000363615 91 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 Y_RNA.557-201ENST00000384680 107 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 RN7SKP111-201ENST00000410349 271 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 HMGB3P2-201ENST00000411913 584 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 CENPBD1P1-201ENST00000464061 469 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-581P-201ENST00000516214 105 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 AP000867.2-201ENST00000532468 320 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 MIR4276-201ENST00000584832 70 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 AF117829.1-206ENST00000621883 3802 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 AC138305.3-201ENST00000624988 240 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 AC106871.1-201ENST00000568324 3102 ntBASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.65□□□□□ -1.83
PCIF1Q9H4Z3 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 PWAR6-201ENST00000552334 4618 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 RNU1-70P-201ENST00000362618 164 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 RNU1-33P-201ENST00000364249 162 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 MIR184-201ENST00000384962 84 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 MIR1183-201ENST00000408856 89 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 RNA5SP38-201ENST00000410750 119 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 SNRPEP4-201ENST00000435815 279 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 CYCSP32-201ENST00000440548 321 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC243964.1-201ENST00000441814 261 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 PRSS3P4-201ENST00000453323 162 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC010099.1-201ENST00000455434 375 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC009812.2-201ENST00000517657 457 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC006199.1-201ENST00000548728 219 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC021739.1-201ENST00000559631 174 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 AC110741.2-201ENST00000605278 268 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 MIR7975-201ENST00000619350 68 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 ZNF72P-201ENST00000425869 1908 ntBASIC3.64□□□□□ -1.83
PCIF1Q9H4Z3 ADAM3A-203ENST00000461344 2157 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AP002088.1-201ENST00000382740 395 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 Y_RNA.389-201ENST00000383924 113 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-574P-201ENST00000384265 107 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 MIR7-3-201ENST00000384898 110 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 MIR568-201ENST00000385036 95 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-823P-201ENST00000391042 103 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 BTF3L4P2-201ENST00000392798 346 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 RNA5SP494-201ENST00000410653 129 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AC017083.1-201ENST00000428093 483 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AC092423.1-201ENST00000430165 186 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 MTCO3P29-201ENST00000432119 779 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AL591043.1-201ENST00000432461 424 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 SSXP4-201ENST00000451349 245 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 RPL7P47-201ENST00000497299 556 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 RNU7-4P-201ENST00000516961 62 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-1231P-201ENST00000517185 103 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 NACAP3-201ENST00000552100 481 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 HSBP1P1-201ENST00000555205 166 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AC069200.1-201ENST00000609511 323 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 AC087588.2-201ENST00000617667 426 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms