Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
EBF3Q9H4W6 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 DEFB108F-201ENST00000344638 222 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 RNU6-190P-201ENST00000384154 102 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.476-201ENST00000384347 108 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 SNORA46-201ENST00000384762 135 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 AL591704.1-201ENST00000432574 275 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 FABP5P13-201ENST00000452144 328 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 AC107222.1-201ENST00000510899 637 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.668-201ENST00000516233 93 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 MYL12BP1-201ENST00000569826 507 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 MIR3941-201ENST00000582572 103 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 AC011494.1-201ENST00000596454 237 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 AL109918.3-201ENST00000603072 338 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 PRR13P7-201ENST00000605538 430 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 SNORD58B-201ENST00000607313 66 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 PISRT1.1-201ENST00000616930 107 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 AC091812.1-201ENST00000432235 1948 ntBASIC3.16□□□□□ -1.9
EBF3Q9H4W6 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.16□□□□□ -1.9
EBF3Q9H4W6 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.9
EBF3Q9H4W6 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
EBF3Q9H4W6 RNU6-490P-201ENST00000362985 107 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 SNORA51.4-201ENST00000364993 124 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.307-201ENST00000365022 117 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 RPS4XP7-201ENST00000406274 780 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 RPL7P10-201ENST00000417407 739 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 DPH3P2-201ENST00000422618 250 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 MRPS18CP6-201ENST00000423587 223 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 UQCRHP3-201ENST00000451503 251 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 SNORD5.1-201ENST00000458800 75 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 RPS29P26-201ENST00000477483 171 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AC015911.1-201ENST00000495111 156 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AC022493.2-201ENST00000506122 481 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 RNU6-927P-201ENST00000516199 100 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.689-201ENST00000516589 107 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 RNU6-388P-201ENST00000517012 105 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 RNU6-389P-201ENST00000517048 105 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 RNU6-323P-201ENST00000521915 107 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AL158032.1-201ENST00000605401 106 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AL136164.4-201ENST00000625013 2135 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 AC005592.1-201ENST00000566527 1640 ntBASIC3.15□□□□□ -1.91
EBF3Q9H4W6 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.15□□□□□ -1.91
EBF3Q9H4W6 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AC138393.1-203ENST00000327086 343 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 RNU5A-1-201ENST00000362698 116 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 RNU6-1303P-201ENST00000364841 107 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 RNU6-128P-201ENST00000383976 107 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 RNU6-842P-201ENST00000384269 107 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 RNU6-823P-201ENST00000391042 103 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 RNU6-1109P-201ENST00000391187 107 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AL513331.1-201ENST00000411908 397 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AL139132.1-201ENST00000431587 344 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AC087588.1-201ENST00000462203 316 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AC116655.1-201ENST00000508324 901 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 RNU4-77P-201ENST00000516692 156 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.721-201ENST00000517207 102 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.14□□□□□ -1.91
EBF3Q9H4W6 SNRPGP16-201ENST00000533275 226 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AC092447.9-201ENST00000603395 144 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AC006023.1-201ENST00000603944 259 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AL355810.1-201ENST00000614629 552 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AF117829.1-206ENST00000621883 3802 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.14□□□□□ -1.91
EBF3Q9H4W6 MTND5P7-201ENST00000413558 1798 ntBASIC3.14□□□□□ -1.91
EBF3Q9H4W6 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.14□□□□□ -1.91
EBF3Q9H4W6 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
EBF3Q9H4W6 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
EBF3Q9H4W6 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
EBF3Q9H4W6 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
EBF3Q9H4W6 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 RNU1-115P-201ENST00000365329 160 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 RNU6-434P-201ENST00000384376 107 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 RNU2-3P-201ENST00000410144 191 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 RNA5SP111-201ENST00000411386 101 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.13□□□□□ -1.91
EBF3Q9H4W6 HMGN2P20-201ENST00000437531 273 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 RPL21P2-201ENST00000440049 481 ntBASIC3.13□□□□□ -1.91
EBF3Q9H4W6 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms