Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.55□□□□□ -2
UPF3AQ9H1J1 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 AC092047.1-201ENST00000424997 240 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AL356867.1-201ENST00000429623 299 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 HMGB1P27-201ENST00000431429 603 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AL591704.1-201ENST00000432574 275 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 ERLEC1P1-201ENST00000433806 578 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AL121601.2-201ENST00000438019 707 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 CECR9-201ENST00000453421 199 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AC022493.1-201ENST00000492984 337 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AC139453.3-201ENST00000493276 369 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 HMGN1P12-201ENST00000499125 195 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 RNU6-507P-201ENST00000516045 100 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 CENPUP1-201ENST00000526649 1202 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AC084851.1-201ENST00000529105 249 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 MIR5194-201ENST00000582634 120 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.55□□□□□ -2
UPF3AQ9H1J1 AC073539.2-201ENST00000597113 165 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 BNIP3P9-201ENST00000603714 553 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 CTHRC1P1-201ENST00000605383 469 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 AL136221.1-201ENST00000621449 509 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 SNORD37.1-201ENST00000390968 65 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 RNA5SP181-201ENST00000410246 98 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 RNA5SP118-201ENST00000410385 109 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 RNA5SP111-201ENST00000411386 101 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 RPL21P111-201ENST00000418453 477 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 SUMO1P4-201ENST00000429430 302 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 RPS15AP28-201ENST00000435088 386 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 Z82210.1-201ENST00000440037 231 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 RNU7-66P-201ENST00000459469 62 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 RPS15AP34-201ENST00000487776 387 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 AL160314.1-201ENST00000490836 438 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 RPL30P5-201ENST00000494923 336 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 RNU2-69P-201ENST00000516061 100 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 SNORA31.15-201ENST00000516771 132 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 AC009902.1-201ENST00000519351 183 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 ATP5F1P5-201ENST00000526403 760 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 OR11H5P-201ENST00000554039 926 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 MTCO3P23-201ENST00000561363 289 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 AC018638.8-201ENST00000588755 281 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 BNIP3P25-201ENST00000596023 559 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 AC092807.2-201ENST00000609367 243 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 AC022306.2-201ENST00000617563 647 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.54□□□□□ -2
UPF3AQ9H1J1 AC100810.6-201ENST00000638068 285 ntBASIC2.54□□□□□ -2
UPF3AQ9H1J1 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
UPF3AQ9H1J1 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC131280.1-202ENST00000624067 4211 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
UPF3AQ9H1J1 AL049641.1-201ENST00000441055 1948 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 SNORD3E-201ENST00000362899 217 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 Y_RNA.157-201ENST00000363638 102 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 RNU6-1303P-201ENST00000364841 107 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 RNU5E-4P-201ENST00000364931 120 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.53□□□□□ -2
UPF3AQ9H1J1 SNORD70.1-201ENST00000391007 85 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 RN7SKP32-201ENST00000410167 303 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC022028.1-201ENST00000412054 408 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.53□□□□□ -2
UPF3AQ9H1J1 PRPS1P1-201ENST00000445305 876 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.53□□□□□ -2
UPF3AQ9H1J1 TRBV1-201ENST00000476502 284 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC091951.2-201ENST00000500762 203 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 RNA5SP290-201ENST00000517133 127 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 RNU6-1315P-201ENST00000517187 99 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC107953.1-201ENST00000522216 297 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 MTND4P7-201ENST00000523876 130 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 BNIP3P6-201ENST00000549284 499 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC105137.2-201ENST00000569073 466 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC005730.3-201ENST00000583067 366 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AL138889.2-201ENST00000603883 242 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC009994.1-201ENST00000606889 253 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC027309.3-201ENST00000623419 351 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AC009033.1-201ENST00000624279 431 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 AL512643.1-201ENST00000635735 524 ntBASIC2.53□□□□□ -2
UPF3AQ9H1J1 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.53□□□□□ -2
UPF3AQ9H1J1 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 ZNF271P-202ENST00000465539 1970 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 ZNF72P-201ENST00000425869 1908 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms