Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AP003730.1-201ENST00000524605 285 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 YPEL5P3-201ENST00000547227 352 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC016256.1-201ENST00000547971 354 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC007375.1-201ENST00000554513 578 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 BNIP3P22-201ENST00000593399 556 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 CYP2C61P-201ENST00000604072 290 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC080078.3-201ENST00000605407 463 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 RNU4-89P-201ENST00000607443 133 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 MIR6868-201ENST00000611215 58 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC107871.2-201ENST00000612894 502 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 HMGB1P24-202ENST00000615653 685 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AL159153.1-201ENST00000619688 317 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 MIR7515-201ENST00000637837 67 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 Z75746.1-201ENST00000440243 2080 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC010329.5-201ENST00000623497 2174 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-486P-201ENST00000363116 107 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-1285P-201ENST00000363480 105 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-890P-201ENST00000384121 107 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 RNU1-57P-201ENST00000384491 166 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 SNORA41-201ENST00000384675 132 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-331P-201ENST00000384724 107 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AL357075.1-201ENST00000404107 726 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AC016397.1-201ENST00000412463 242 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AC244670.1-201ENST00000436879 112 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AC093303.1-201ENST00000514549 295 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 RNA5SP208-201ENST00000516156 78 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 MRPL49P2-201ENST00000521066 465 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 MIR5696-201ENST00000578474 85 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AC008745.1-201ENST00000604064 271 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AC092608.2-201ENST00000624427 218 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 ZNF299P-201ENST00000406845 1804 ntBASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC28AQ8IWP9 AL049781.1-201ENST00000623195 3585 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 OR56A5-201ENST00000340110 738 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 RNA5SP97-201ENST00000365006 84 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-968P-201ENST00000384076 107 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 Y_RNA.504-201ENST00000384481 104 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 Y_RNA.533-201ENST00000384596 114 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AC011816.1-201ENST00000441346 546 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 GPM6BP3-201ENST00000442797 145 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AL513124.1-201ENST00000450410 614 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 UQCRHP3-201ENST00000451503 251 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-56P-201ENST00000516986 93 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 CBX3P8-201ENST00000532412 525 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AC103810.1-201ENST00000579873 453 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 MIR3939-201ENST00000582614 106 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AC060766.3-201ENST00000591442 263 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 AC112484.5-201ENST00000624189 228 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 MIR6733-201ENST00000635723 61 ntBASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC28AQ8IWP9 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AC233981.2-201ENST00000611524 1614 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-529P-201ENST00000363383 104 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 U3.13-201ENST00000364804 214 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 SNORA62-201ENST00000365493 153 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-1286P-201ENST00000383871 107 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-1040P-201ENST00000383974 107 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 MIR186-201ENST00000384988 86 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 MICF-203ENST00000432679 129 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 AC027575.1-201ENST00000481064 460 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 RAC1P2-201ENST00000511164 579 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 SNORA25.11-201ENST00000515935 105 ntBASIC2.91□□□□□ -1.94
CCDC28AQ8IWP9 RNA5SP217-201ENST00000515959 91 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms