Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 snoU13.30-201ENST00000458951 104 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 RPS26P21-201ENST00000475397 348 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 RPL23AP75-201ENST00000491601 451 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 MTND4LP22-201ENST00000508209 276 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.75□□□□□ -1.81
USP53Q70EK8 SNORA70.14-201ENST00000516205 110 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.75□□□□□ -1.81
USP53Q70EK8 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 AC034114.1-201ENST00000520293 285 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.75□□□□□ -1.81
USP53Q70EK8 AC007458.1-201ENST00000542812 373 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.75□□□□□ -1.81
USP53Q70EK8 AC090517.1-201ENST00000569307 266 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 AC010928.2-201ENST00000588017 287 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 AL138880.2-201ENST00000616214 239 ntBASIC3.75□□□□□ -1.81
USP53Q70EK8 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.75□□□□□ -1.81
USP53Q70EK8 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP53Q70EK8 MAPK10-372ENST00000641954 3413 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP53Q70EK8 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
USP53Q70EK8 HAUS6P2-201ENST00000433254 2404 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
USP53Q70EK8 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP53Q70EK8 Y_RNA.27-201ENST00000362540 103 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 Y_RNA.188-201ENST00000363952 111 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 U3.13-201ENST00000364804 214 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 RNU6-708P-201ENST00000384217 107 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 RNU6-713P-201ENST00000384761 107 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
USP53Q70EK8 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USP53Q70EK8 ELOCP20-201ENST00000422460 345 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 AL139247.1-201ENST00000422768 325 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 AC083863.1-201ENST00000438811 231 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 AL714022.1-201ENST00000439897 151 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 RPL30P1-201ENST00000488676 339 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 SCARNA14-201ENST00000516903 136 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 CKS1BP7-201ENST00000522230 235 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 AC016256.1-201ENST00000547971 354 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 AL442163.3-201ENST00000554110 156 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.74□□□□□ -1.81
USP53Q70EK8 AC087499.8-201ENST00000578406 226 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 AL591424.2-201ENST00000617023 128 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 MIR3529-201ENST00000637713 78 ntBASIC3.74□□□□□ -1.81
USP53Q70EK8 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP53Q70EK8 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
USP53Q70EK8 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.74□□□□□ -1.81
USP53Q70EK8 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP53Q70EK8 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
USP53Q70EK8 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.73□□□□□ -1.81
USP53Q70EK8 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
USP53Q70EK8 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP53Q70EK8 MIR423-201ENST00000362201 94 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 RNU1-76P-201ENST00000362903 159 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 RNA5SP322-201ENST00000363617 119 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 SNORD115-32-201ENST00000364079 82 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 RNU1-140P-201ENST00000365040 165 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 Y_RNA.358-201ENST00000365491 99 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 U1.1-201ENST00000384101 164 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 RNU6-843P-201ENST00000384454 104 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 PTMAP5-201ENST00000393073 333 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 RPL21P75-201ENST00000396599 483 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 RPL21P28-201ENST00000401418 483 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 Z98941.1-201ENST00000407764 100 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AL356968.1-201ENST00000416622 474 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AL590556.1-201ENST00000423231 483 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AL591419.1-201ENST00000427423 339 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AC108059.2-201ENST00000434626 151 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 HMGB1P37-201ENST00000439613 609 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AC009296.1-201ENST00000443146 155 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AL353705.4-201ENST00000449661 238 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AC010099.1-201ENST00000455434 375 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.73□□□□□ -1.81
USP53Q70EK8 RPL21P39-201ENST00000463605 483 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AC087190.1-201ENST00000484462 480 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AC107032.1-201ENST00000485945 480 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AP001025.1-201ENST00000486139 332 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AC132942.1-201ENST00000486753 483 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AC093591.1-201ENST00000491435 481 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 RPL21P16-201ENST00000495531 483 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 ANXA2P1-201ENST00000505539 926 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 MIR2355-201ENST00000517199 87 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.73□□□□□ -1.81
USP53Q70EK8 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.73□□□□□ -1.81
USP53Q70EK8 AC244505.7-201ENST00000599675 272 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 SNORA43.4-201ENST00000629559 138 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.73□□□□□ -1.81
USP53Q70EK8 MIR3199-2-201ENST00000636243 86 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 Z75746.1-201ENST00000440243 2080 ntBASIC3.73□□□□□ -1.81
USP53Q70EK8 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP53Q70EK8 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.73□□□□□ -1.81
USP53Q70EK8 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USP53Q70EK8 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
USP53Q70EK8 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.72□□□□□ -1.81
USP53Q70EK8 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP53Q70EK8 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USP53Q70EK8 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
USP53Q70EK8 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.72□□□□□ -1.81
USP53Q70EK8 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP53Q70EK8 RNU6-487P-201ENST00000365430 104 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 174.2 ms