Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC40Q4G0X9 RNU6-655P-201ENST00000362858 107 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 RNU6-78P-201ENST00000362897 107 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 SNORD56.1-201ENST00000362913 68 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 RNU6-1287P-201ENST00000362914 107 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 RNU6-1097P-201ENST00000363586 107 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 RNU6-45P-201ENST00000384471 107 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 RNU6-1060P-201ENST00000384664 107 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 MIR1-2-201ENST00000384961 85 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 HMGN2P39-201ENST00000398005 273 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AL049545.1-201ENST00000401856 572 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 CYCSP33-201ENST00000414485 327 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 BX295541.1-201ENST00000417774 250 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 EIF1AXP1-201ENST00000419267 435 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AC092447.3-201ENST00000426027 686 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AL445646.1-201ENST00000431784 216 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 MTCO3P28-201ENST00000513351 515 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AC245014.2-201ENST00000603689 287 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AC246785.4-201ENST00000605374 287 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 AP000770.2-201ENST00000623694 100 ntBASIC2.14□□□□□ -2.07
CCDC40Q4G0X9 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 ZNF702P-202ENST00000434269 1966 ntBASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 AL512604.1-201ENST00000404812 257 ntBASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 OR9R1P-201ENST00000412200 877 ntBASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 snoU13.14-201ENST00000459372 104 ntBASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 MTCYBP40-201ENST00000509390 1135 ntBASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 Z84480.1-201ENST00000605131 311 ntBASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 AC013412.1-201ENST00000610687 192 ntBASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 AC090517.3-201ENST00000625170 141 ntBASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 AP006437.1-201ENST00000641440 3685 ntBASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC40Q4G0X9 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 RNA5SP276-201ENST00000362580 94 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 RNU6-212P-201ENST00000362642 104 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 RNU6-1210P-201ENST00000363775 107 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 U3.13-201ENST00000364804 214 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 RNU6-282P-201ENST00000365357 103 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 RNU6-1274P-201ENST00000384557 107 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 RNU2-20P-201ENST00000410425 191 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AL451074.3-201ENST00000437709 472 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 DNAJC19P4-201ENST00000440115 345 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 RPL32P28-201ENST00000443577 397 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 RNU7-182P-201ENST00000459009 62 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 RPL30P12-201ENST00000474666 353 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AC074344.1-201ENST00000512823 224 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AC104136.1-201ENST00000512969 394 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 NDUFA5P6-201ENST00000542110 379 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AL096840.1-201ENST00000603287 93 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AC006566.1-201ENST00000608943 513 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 AL627230.6-201ENST00000611129 280 ntBASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC40Q4G0X9 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U8.2-201ENST00000363156 134 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 Y_RNA.201-201ENST00000364052 96 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 RNU6-715P-201ENST00000365204 103 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 RNU5E-7P-201ENST00000365290 117 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 CBX3P9-201ENST00000402326 552 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 RNU2-2P-201ENST00000410396 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC096920.1-201ENST00000423991 241 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms